Browse Element(s) Details


Os.27007.1.A1_at

Description gb:CB633209
DB_XREF= gi:29628198
DB_XREF=OSIIEb11O17.r
CLONE=OSIIEb11O17
TID=Os.27007.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.27007 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_568786.1 (A.thaliana) protein phosphatase 2C-like (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1536011/11expressed protein
LOC_Os05g153703/11ribosomal protein L13 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15280OsAffx.20877.1.S1_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15280Os.48015.1.A1_x_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15280OsAffx.10665.2.S1_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15290NANA5+8649347..8651906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15300Os.55077.1.S1_at11/115+8655868..8658571expressed protein
LOC_Os05g15310OsAffx.26905.1.S1_at11/115+8658997..8659323hypothetical protein
LOC_Os05g15320NANA5+8659936..8663086transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15330OsAffx.26906.1.S1_at10/115+8663358..8664316hypothetical protein
LOC_Os05g15340NANA5+8666397..8667505retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g15350OsAffx.14706.1.S1_at11/115+8668015..8669655hypothetical protein
LOC_Os05g15350OsAffx.14659.1.S1_at2/115+8668015..8669655hypothetical protein
LOC_Os05g15360Os.27007.1.A1_at11/115+8671073..8675764expressed protein
LOC_Os05g15360Os.20186.1.S1_at11/115+8671073..8675764expressed protein
LOC_Os05g15360Os.49286.1.S1_x_at10/115+8671073..8675764expressed protein
LOC_Os05g15360Os.24955.1.A1_x_at1/115+8671073..8675764expressed protein
LOC_Os05g15370Os.27007.1.A1_at3/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.49286.1.S1_x_at2/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.9815.1.S1_at2/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.24955.1.A1_x_at1/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15380OsAffx.31445.1.S1_at11/115+8684556..8685685lipase class 3 family protein, putative
LOC_Os05g15380OsAffx.31445.1.S1_x_at11/115+8684556..8685685lipase class 3 family protein, putative
LOC_Os05g15390OsAffx.26907.1.S1_at11/115+8686719..8687499hypothetical protein
LOC_Os05g15400NANA5+8689001..8692779hypothetical protein
LOC_Os05g15410OsAffx.4345.1.S1_at11/115+8696438..8696903hypothetical protein
LOC_Os05g15420Os.27691.1.S1_x_at1/115+8700243..8701208retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27007.1.A1_at--573--1191Chr05:8671652..8671676 (25 bp)
AGTTTTTTCCTCTCTGGTATAATCA
LOC_Os05g15360
Os.27007.1.A1_at--679--171Chr05:8671608..8671632 (25 bp)
ATTTTCCTACAATTCTCATCTTCGA
LOC_Os05g15360
Os.27007.1.A1_at--295--1191Chr05:8671575..8671599 (25 bp)
AGTAGCTTCATATAACGCTGTTATT
LOC_Os05g15360
Os.27007.1.A1_at--944--132Chr05:8677223..8677247 (25 bp)
ATTAAGCATGTACTGTTCTGATCAC
LOC_Os05g15370
Os.27007.1.A1_at--1047--10592Chr05:8677208..8677232 (25 bp)
TTCTGATCACAGGACAGGGATCGTA
LOC_Os05g15370
Os.27007.1.A1_at--476--591Chr05:8671444..8671468 (25 bp)
ATGCCACCACGCCAAGTGCAGGAGA
LOC_Os05g15360
Os.27007.1.A1_at--1044--2273Chr01:39326829..39326853 (25 bp)
AAATCCGAGATCACTGCATAGATGC
NONE
Os.27007.1.A1_at--1120--9051Chr05:8671307..8671331 (25 bp)
TGCATAGATGCACACTCAGATGTGT
LOC_Os05g15360
Os.27007.1.A1_at--771--7711Chr05:8671275..8671299 (25 bp)
GGGTGGAGATTGTTACTACTCCTAT
LOC_Os05g15360
Os.27007.1.A1_at--471--9911Chr05:8671259..8671283 (25 bp)
TACTCCTATATTGCAAGTCTACCTG
LOC_Os05g15360
Os.27007.1.A1_at--717--7131Chr05:8671243..8671267 (25 bp)
GTCTACCTGTTGCTGTTTTTTAAAG
LOC_Os05g15360
Target Sequence 
AGTTTTTTCCTCTCTGGTATAATCAAGTGTGGTCAAAAATGTATATTTTCCTACAATTCTCATCTTCGAATTGTTAAAGT
AGCTTCATATAACGCTGTTATTGCTTATTAAGCATGTACTGTTCTGATCACAGGACAGGGATCGTAAATTGAGGATATTT
TCTGGAAATGAGCACNCATTCCATGATCGCCCTCTTGAACCTTTTGTGATGCCACCACGCCAAGTGCAGGAGATGCGTCC
CCGGGCAAGACGTGCATTGTTAAGGGCGCAGAAGAAAGAGCAGGACAGAGCAGCGGCATCAACCAAAGATGATGAAAATG
CTAAGAATGCCAAATCCGAGATCACTGCATAGATGCACACTCAGATGTGTGTTGTGTGGGTGGAGATTGTTACTACTCCT
ATATTGCAAGTCTACCTGTTGCTGTTTTTTAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27007.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis