Browse Element(s) Details


Os.27021.1.S1_at

Description gb:AK072847.1
DB_XREF= gi:32982870
TID=Os.27021.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023142J16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142J16, full insert sequence.
FL= gb:AK072847.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1815410/11FAD binding domain in molybdopterin dehydrogenase family protein, expressed
LOC_Os10g036601/11F-box domain containing protein, expressed
LOC_Os07g181201/11Aldehyde oxidase 3, putative, expressed
LOC_Os08g079401/11NB-ARC domain containing protein
LOC_Os02g157901/11hypothetical protein
LOC_Os09g324001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18120Os.18981.1.S1_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.18981.1.S1_x_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120OsAffx.28501.1.S1_x_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.57307.1.S1_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.27021.1.S1_x_at4/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120OsAffx.28501.2.S1_x_at2/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.50754.1.A1_x_at1/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.27021.1.S1_at1/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18130OsAffx.28502.1.S1_at11/117+10737453..10742218hypothetical protein
LOC_Os07g18140OsAffx.28503.1.S1_at11/117+10742802..10743391hypothetical protein
LOC_Os07g18154OsAffx.28504.1.S1_at11/117+10747051..10759138FAD binding domain in molybdopterin dehydrogenase family protein, expressed
LOC_Os07g18154Os.27021.1.S1_x_at11/117+10747051..10759138FAD binding domain in molybdopterin dehydrogenase family protein, expressed
LOC_Os07g18154Os.27021.1.S1_at10/117+10747051..10759138FAD binding domain in molybdopterin dehydrogenase family protein, expressed
LOC_Os07g18170OsAffx.6544.1.S1_at5/117+10767890..10771400transposon protein, putative, unclassified
LOC_Os07g18170OsAffx.18951.1.S1_at1/117+10767890..10771400transposon protein, putative, unclassified
LOC_Os07g18180OsAffx.16321.1.S1_x_at11/117+10773676..10774242hypothetical protein
LOC_Os07g18180Os.25910.1.S1_s_at1/117+10773676..10774242hypothetical protein
LOC_Os07g18190OsAffx.22722.1.S1_at1/117+10779075..10786151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18190OsAffx.22722.1.S1_x_at1/117+10779075..10786151retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009688biological_processabscisic acid biosynthesis
GO:0009851biological_processauxin biosynthesis
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0004031molecular_functionaldehyde oxidase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27021.1.S1_at--819--7112Chr07:10758857..10758881 (25 bp)
GTCAGATCACTCCATGTGAGAATCT
LOC_Os07g18154
Os.27021.1.S1_at--348--6451Chr07:10758861..10758885 (25 bp)
GATCACTCCATGTGAGAATCTAATT
LOC_Os07g18154
Os.27021.1.S1_at--770--5951Chr07:10758874..10758898 (25 bp)
GAGAATCTAATTTATTATCACACTA
LOC_Os07g18154
Os.27021.1.S1_at--1050--171Chr07:10758883..10758907 (25 bp)
ATTTATTATCACACTAGTCTTTTTT
LOC_Os07g18154
Os.27021.1.S1_at--208--98541Chr11:24391084..24391108 (25 bp)
TACTCAGGTCACTGTAACCACTAGG
NONE
Os.27021.1.S1_at--560--8311Chr07:10759073..10759097 (25 bp)
GGCTACATGCCCTTTTGTATTATCA
LOC_Os07g18154
Os.27021.1.S1_at--241--591Chr07:10759079..10759103 (25 bp)
ATGCCCTTTTGTATTATCACACTAG
LOC_Os07g18154
Os.27021.1.S1_at--328--10391Chr07:10759085..10759109 (25 bp)
TTTTGTATTATCACACTAGTCTAGT
LOC_Os07g18154
Os.27021.1.S1_at--779--2031Chr07:10759099..10759123 (25 bp)
ACTAGTCTAGTAATTGCTATGCCTT
LOC_Os07g18154
Os.27021.1.S1_at--515--31Chr07:10759111..10759135 (25 bp)
ATTGCTATGCCTTACTATGAAGGGA
LOC_Os07g18154
Os.27021.1.S1_at--146--10471Chr07:10759122..10759146 (25 bp)
TTACTATGAAGGGAAATCTATACTG
NONE
Target Sequence 
GTCAGATCACTCCATGTGAGAATCTAATTTATTATCACACTAGTCTTTTTTTTTTATAGAGAAGGGTATTTTTTTACCCA
GCCTCTACATCCAACCAGATATATACGGCCATTGAAATAGGGAACTTAGCCTCACAAACAACCCAATCTAAAATTCGCTC
CATAGGAGATTTGAACTCAGGACCTTGGGGTACTACTCAGGTCACTGTAACCACTAGGCTACATGCCCTTTTGTATTATC
ACACTAGTCTAGTAATTGCTATGCCTTACTATGAAGGGAAATCTATACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis