Browse Element(s) Details


Os.27023.1.A1_at

Description gb:CB633927
DB_XREF= gi:29628916
DB_XREF=OSIIEb13C01.r
CLONE=OSIIEb13C01
TID=Os.27023.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27023 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4019010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40140Os.23932.1.A1_at11/114+23666492..23670448expressed protein
LOC_Os04g40140Os.11595.2.S1_at1/114+23666492..23670448expressed protein
LOC_Os04g40150Os.12301.1.S1_at11/114+23673726..23677378glycosyl transferase family 17 protein, putative, expressed
LOC_Os04g40160OsAffx.26402.1.S1_at11/114+23678469..23682309hypothetical protein
LOC_Os04g40170OsAffx.14214.1.S1_at11/114+23692317..23692953hypothetical protein
LOC_Os04g40180Os.50983.1.S1_at11/114+23693789..23696092expressed protein
LOC_Os04g40190Os.11411.2.S1_a_at11/114+23695137..23697917expressed protein
LOC_Os04g40190Os.27023.1.A1_at10/114+23695137..23697917expressed protein
LOC_Os04g40190Os.46604.1.S1_s_at2/114+23695137..23697917expressed protein
LOC_Os04g40200OsAffx.26403.1.S1_at11/114+23699937..23701782HNH endonuclease domain-containing protein, putative
LOC_Os04g40200OsAffx.32172.1.S1_s_at1/114+23699937..23701782HNH endonuclease domain-containing protein, putative
LOC_Os04g40210NANA4+23704411..23705266transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40220Os.27102.1.S1_x_at1/114+23708417..23711214transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40230NANA4+23713603..23714869transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40240NANA4+23715163..23717382transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40250Os.53658.1.S1_at8/114+23720171..23722903hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27023.1.A1_at--637--6751NONE
GTTCAACGCCTTGAGGGCAGATCCA
NONE
Os.27023.1.A1_at--50--611Chr04:23695657..23695681 (25 bp)
ATGCCCCGCCAGTATTGGTTAACAG
LOC_Os04g40190
Os.27023.1.A1_at--225--791Chr04:23695617..23695638 (22 bp)
ATGGGCCTAATTCCTCTTGTAGTTG
LOC_Os04g40190
Os.27023.1.A1_at--460--8391Chr04:23695464..23695488 (25 bp)
GGCGAATCATCTCAGCATGGTCACG
LOC_Os04g40190
Os.27023.1.A1_at--44--3511Chr04:23695449..23695473 (25 bp)
CATGGTCACGCTTCTTGTTGTATGA
LOC_Os04g40190
Os.27023.1.A1_at--545--10791Chr04:23695435..23695459 (25 bp)
TTGTTGTATGACTTGCACCAGCGCT
LOC_Os04g40190
Os.27023.1.A1_at--138--3391Chr04:23695417..23695441 (25 bp)
CAGCGCTCATATAAGGCCCATACGG
LOC_Os04g40190
Os.27023.1.A1_at--48--331Chr04:23695398..23695422 (25 bp)
ATACGGCTTGATCTGACTCGAGGTC
LOC_Os04g40190
Os.27023.1.A1_at--505--6131Chr04:23695379..23695403 (25 bp)
GAGGTCCTTGGCTGTAACGCACTTA
LOC_Os04g40190
Os.27023.1.A1_at--379--5112Chr12:26981728..26981756 (25 bp)
GCACTTACCATCATCTATCACAATT
NONE
Os.27023.1.A1_at--688--5211Chr04:23695255..23695279 (25 bp)
GAATTAGATCCCAGCCTTTGGCTCA
LOC_Os04g40190
Target Sequence 
GTTCAACGCCTTGAGGGCAGATCCATCCCTTGGTCATTTTCCTTCAACATGCCCCGCCAGTATTGGTTAACAGTGTCTCC
CCCATCGGCGGATGGGCCTAATTCCTCTTGTAGTTGTGCACAAGCGATGCTTTCAGCTTGAATATGTCGAACCGGCGAAT
CATCTCAGCATGGTCACGCTTCTTGTTGTATGACTTGCACCAGCGCTCATATAAGGCCCATACGGCTTGATCTGACTCGA
GGTCCTTGGCTGTAACGCACTTACCATCATCTATCACAATTCAATTCGCAAAAGTTAGTAGTGTGAACAAATTTGATTTT
TCGCAAGCACAAAGAAGAATTTATATGATGTTTCAGATAATGGAATTAGATCCCAGCCTTTGGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27023.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis