Browse Element(s) Details


Os.27043.1.A1_at

Description gb:CB634890
DB_XREF= gi:29629881
DB_XREF=OSIIEb14L16.r
CLONE=OSIIEb14L16
TID=Os.27043.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27043 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_177209.1 (A.thaliana) putative protein kinase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g039208/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03884OsAffx.2978.2.S1_s_at11/115+1702540..1708864KNOX2 domain containing protein, expressed
LOC_Os05g03884Os.4162.1.S1_at11/115+1702540..1708864KNOX2 domain containing protein, expressed
LOC_Os05g03900OsAffx.26722.1.S1_at11/115+1721096..1723308WRKY DNA binding domain containing protein, expressed
LOC_Os05g03900OsAffx.26722.2.S1_s_at11/115+1721096..1723308WRKY DNA binding domain containing protein, expressed
LOC_Os05g03910Os.16058.1.S1_at11/115+1722623..1726877TPR Domain containing protein, expressed
LOC_Os05g03920Os.27043.1.A1_at8/115+1730509..1733705Protein kinase domain containing protein, expressed
LOC_Os05g03930NANA5+1736758..1737058hypothetical protein
LOC_Os05g03940NANA5+1744708..1748981transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03950Os.14491.2.S1_x_at3/115+1751984..1755684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03950Os.47463.1.S1_x_at3/115+1751984..1755684transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27043.1.A1_at--541--7911Chr05:1733080..1733104 (25 bp)
GGTTGCTTCATCAGCAGAAGGGCAT
LOC_Os05g03920
Os.27043.1.A1_at--346--4951Chr05:1733101..1733223 (25 bp)
GCATTCCCTCATGTCACTGATATGG
LOC_Os05g03920
Os.27043.1.A1_at--817--1491Chr05:1733225..1733249 (25 bp)
AGCACTACAATGAAGGCACCCTGAT
LOC_Os05g03920
Os.27043.1.A1_at--699--5091Chr05:1733240..1733264 (25 bp)
GCACCCTGATGGAACTATTGGACCC
LOC_Os05g03920
Os.27043.1.A1_at--627--10231NONE
TATTGGACCCAAACCTCCGAGAGCA
NONE
Os.27043.1.A1_at--1126--8071Chr05:1733293..1733317 (25 bp)
GGAGCTCTCAAGGTGTTCCATGTTG
LOC_Os05g03920
Os.27043.1.A1_at--708--10671Chr05:1733308..1733332 (25 bp)
TTCCATGTTGGACTACTATGTGCGC
LOC_Os05g03920
Os.27043.1.A1_at--877--9891Chr05:1733321..1733345 (25 bp)
TACTATGTGCGCAAGCTTCACCGAA
LOC_Os05g03920
Os.27043.1.A1_at--2--4111Chr05:1733342..1733366 (25 bp)
CGAACCTTAGGCCACCGATGTGGAA
LOC_Os05g03920
Os.27043.1.A1_at--25--9351NONE
TCGCTGAACCAGCTATCGGTGAGTG
NONE
Os.27043.1.A1_at--516--5531NONE
GAAAAATGAAGTTTTGCCCTCTTGG
NONE
Target Sequence 
GGTTGCTTCATCAGCAGAAGGGCATTCCCTCATGTCACTGATATGGAAGCACTACAATGAAGGCACCCTGATGGAACTAT
TGGACCCAAACCTCCGAGAGCAATGCACGGAGGAGGGAGCTCTCAAGGTGTTCCATGTTGGACTACTATGTGCGCAAGCT
TCACCGAACCTTAGGCCACCGATGTGGAAGGTGGTCGAGATGTTGGGTAGTAGGAACAATGAGCTTCCTNGGCCTACCCA
GCCCCCATTCATCAACATAAAGGGGTNGAATGCGAAGAGCACCAGCTCAGGTTCTTNNTNNTTTGAAGTCAAACTCAGNC
AAGTNNCCCTTNTCGCTGAACCAGCTATCGGTGAGTGGAGTNCAGGCCAGGTAACAATGGTNTGAAGGACAATNTTGATA
TTTTTGTTCATTCCAAGATGTACTTCATTTTTTCAGNTAAAGGTTNTTTCATCTGATCATGGTGTAAAATAGTCCTTGTA
GAAANGCGTCCTACNTTGTAAGTAAGCANANGAAGAAATTATAATTTTTGTCAAACATTGGGAAAAATGAAGTTTTGCCC
TCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27043.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis