Browse Element(s) Details


Os.27064.1.S2_at

Description gb:AK068783.1
DB_XREF= gi:32978808
TID=Os.27064.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27064 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033095C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158O18, full insert sequence.
FL= gb:AK068783.1 gb:AK102501.1 gb:AK058357.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g114803/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g11450OsAffx.29152.1.S1_s_at11/118+6713204..6713889expressed protein
LOC_Os08g11459NANA8+6719253..6719424NA
LOC_Os08g11470Os.53418.1.S1_at11/118+6722113..6726423transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g11470OsAffx.18618.1.S1_at1/118+6722113..6726423transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g11480Os.50425.1.S1_at10/118+6729401..6733397expressed protein
LOC_Os08g11480Os.27064.1.S2_at3/118+6729401..6733397expressed protein
LOC_Os08g11490OsAffx.29153.1.S1_at11/118+6736141..6736536hypothetical protein
LOC_Os08g11500OsAffx.5787.1.S1_at10/118+6739502..6741280hypothetical protein
LOC_Os08g11510OsAffx.29154.1.S1_at11/118+6745757..6746038hypothetical protein
LOC_Os08g11520OsAffx.29155.1.S1_at11/118+6747298..6748956hypothetical protein
LOC_Os08g11530Os.45173.1.S1_x_at1/118+6752314..6753508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11540Os.46715.1.S1_x_at1/118+6755789..6758661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11540Os.56292.1.S1_x_at1/118+6755789..6758661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11540Os.56292.1.S1_at1/118+6755789..6758661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11540Os.46715.1.S1_at1/118+6755789..6758661retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27064.1.S2_at--472--6594Chr12:9465145..9465169 (25 bp)
GATTGCATATGTAGCTATTTTGTTT
NONE
Os.27064.1.S2_at--45--10252Chr12:9465171..9465195 (25 bp)
TTTGAACCTAGCCAGTTTGCATGGT
NONE
Os.27064.1.S2_at--936--10731Chr12:9465187..9465211 (25 bp)
TTGCATGGTCTCGTCAGTTTGTGAT
NONE
Os.27064.1.S2_at--296--7811Chr12:9465193..9465217 (25 bp)
GGTCTCGTCAGTTTGTGATCAAGAA
NONE
Os.27064.1.S2_at--1032--6494Chr12:9465236..9465260 (25 bp)
GATAGTTCTTTATATTCTACATGCA
NONE
Os.27064.1.S2_at--934--653Chr12:9465256..9465280 (25 bp)
ATGCAAGATTGCTCACAGATTCCAA
NONE
Os.27064.1.S2_at--660--3433Chr12:9465271..9465295 (25 bp)
CAGATTCCAAACCATTATTTTTAGG
NONE
Os.27064.1.S2_at--943--7671Chr12:9465646..9465670 (25 bp)
GGGTTGATTTGGTACTGATCTTAAT
NONE
Os.27064.1.S2_at--990--7431NONE
GTGTCCATTGGACCCATGTGTACTG
NONE
Os.27064.1.S2_at--676--10851NONE
TTGGACCCATGTGTACTGAGTTCAT
NONE
Os.27064.1.S2_at--966--5711NONE
GAGTTCATGATTGAAACCCCCCAGT
NONE
Target Sequence 
GATTGCATATGTAGCTATTTTGTTTATTTGAACCTAGCCAGTTTGCATGGTCTCGTCAGTTTGTGATCAAGAATGTATTT
ATATTATGATAGATAGTTCTTTATATTCTACATGCAAGATTGCTCACAGATTCCAAACCATTATTTTTAGGTCAAAATCG
GAAGGGCTGCTGAAATTGTTCTGCTAAAGATGTCACTTGTCCCAGAAATTGTCCATTGAAGAGTTTTTTGCTGATGCTCT
TGTAGACTTGTCCATTAAAGATGTCACTTGTCCTAGAAATTGTCCAATGAAGAAATTGTCCATTGTCCATTGAAGACTTG
TCTGTACTCTTGTGTGCATATGCTCTATGCAGATGCATATATATATTGCTATCCTAGGTGCAACAGAACTGTTTTTTTTT
TTACCTGAGATGCAACAGATGTTGAATGCATATTGATAGTCTATGGAGTCTTGAATTGCTGNATGTGTGTTAAATGTCTA
TGGAATTTGTACNGATTTTGTGGGTTGATTTGGTACTGATCTTAATTTGTGTCCATTGGACCCATGTGTACTGAGTTCAT
GATTGAAACCCCCCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27064.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis