Browse Element(s) Details


Os.50425.1.S1_at

Description gb:AK121156.1
DB_XREF= gi:37990779
TID=Os.50425.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50425 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023079A20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023079A20, full insert sequence.
FL= gb:AK121156.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1148010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g11450OsAffx.29152.1.S1_s_at11/118+6713204..6713889expressed protein
LOC_Os08g11459NANA8+6719253..6719424NA
LOC_Os08g11470Os.53418.1.S1_at11/118+6722113..6726423transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g11470OsAffx.18618.1.S1_at1/118+6722113..6726423transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g11480Os.50425.1.S1_at10/118+6729401..6733397expressed protein
LOC_Os08g11480Os.27064.1.S2_at3/118+6729401..6733397expressed protein
LOC_Os08g11490OsAffx.29153.1.S1_at11/118+6736141..6736536hypothetical protein
LOC_Os08g11500OsAffx.5787.1.S1_at10/118+6739502..6741280hypothetical protein
LOC_Os08g11510OsAffx.29154.1.S1_at11/118+6745757..6746038hypothetical protein
LOC_Os08g11520OsAffx.29155.1.S1_at11/118+6747298..6748956hypothetical protein
LOC_Os08g11530Os.45173.1.S1_x_at1/118+6752314..6753508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11540Os.46715.1.S1_x_at1/118+6755789..6758661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11540Os.56292.1.S1_x_at1/118+6755789..6758661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11540Os.56292.1.S1_at1/118+6755789..6758661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11540Os.46715.1.S1_at1/118+6755789..6758661retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50425.1.S1_at--435--2311Chr08:6732246..6732270 (25 bp)
AAAGGGTACCCTGCTGTCAGCAAAT
LOC_Os08g11480
Os.50425.1.S1_at--241--6131Chr08:6732285..6732309 (25 bp)
GAGTGGCACTCAATTGGGTCCTGAT
LOC_Os08g11480
Os.50425.1.S1_at--602--4611Chr08:6732336..6732360 (25 bp)
GCTGAAAAGGGCTGCTCCATTCCTT
LOC_Os08g11480
Os.50425.1.S1_at--194--91Chr08:6732354..6732378 (25 bp)
ATTCCTTCGTCCGTATGGTAACATG
LOC_Os08g11480
Os.50425.1.S1_at--662--5471Chr08:6732378..6732402 (25 bp)
GAACTACATTTCTGATGCTGTTGGA
LOC_Os08g11480
Os.50425.1.S1_at--919--10211NONE
TATTGCATGGCCACGACAACATATA
NONE
Os.50425.1.S1_at--1126--2291Chr08:6732531..6732555 (25 bp)
AAAGTCTCTAGCACAACCTGAAGGT
LOC_Os08g11480
Os.50425.1.S1_at--110--6971Chr08:6732554..6733004 (25 bp)
GTAGCCGTGTTCGTGGTCAAAATCG
LOC_Os08g11480
Os.50425.1.S1_at--708--6512Chr08:6733105..6733129 (25 bp)
GATATCACTTGTCCCAACAACAAAG
LOC_Os08g11480
Os.50425.1.S1_at--1048--251Chr08:6733223..6733247 (25 bp)
ATATGCTCTATGCTCTATGCAGAGG
LOC_Os08g11480
Os.50425.1.S1_at--960--7851Chr08:6733313..6733337 (25 bp)
GGTATGGAACCCTACAATGCAATGT
LOC_Os08g11480
Target Sequence 
AAAGGGTACCCTGCTGTCAGCAAATCGGATGACTGTAGTGAGTGGCACTCAATTGGGTCCTGATTGTTGTGAAGTTGTGG
TGAATCACGTGCTGAAAAGGGCTGCTCCATTCCTTCGTCCGTATGGTAACATGAACTACATTTCTGATGCTGTTGGAAGG
TCTATTGCATGGCCACGACAACATATAAAGGAACAACAAAAGTCTCTAGCACAACCTGAAGGTAGCCGTGTTCGTGGTCA
AAATCGGAAGGGCTACTGAAATTGTTCTGCTAAAGGGTTACTTGTCCCAGAAATTGTCCATTGAAGATTTTTTGCTGAAG
TTATTTCTGAATGAAGACCTGCTAAAGATATCACTTGTCCCAACAACAAAGACCTACAAAAGACCCATTGTGTATTTATA
TTAGAATTTGAAAGAGATGTCACTTAAAGTTAATGAATGCTAAGAATTATCTGTACTCATATGCATATGCTCTATGCTCT
ATGCAGAGGCATGTAAATATTGCTCCTAGGTGCAACATAATTGTTACTCATGAATTTGTTATTGCTGAAACTGTGGTATG
GAACCCTACAATGCAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis