Browse Element(s) Details


Os.53418.1.S1_at

Description gb:AK072536.1
DB_XREF= gi:32982559
TID=Os.53418.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53418 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133P19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133P19, full insert sequence.
FL= gb:AK072536.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1147011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g11430NANA8+6693835..6698016retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11440NANA8+6701079..6702387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11450OsAffx.29152.1.S1_s_at11/118+6713204..6713889expressed protein
LOC_Os08g11459NANA8+6719253..6719424NA
LOC_Os08g11470Os.53418.1.S1_at11/118+6722113..6726423transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g11470OsAffx.18618.1.S1_at1/118+6722113..6726423transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g11480Os.50425.1.S1_at10/118+6729401..6733397expressed protein
LOC_Os08g11480Os.27064.1.S2_at3/118+6729401..6733397expressed protein
LOC_Os08g11490OsAffx.29153.1.S1_at11/118+6736141..6736536hypothetical protein
LOC_Os08g11500OsAffx.5787.1.S1_at10/118+6739502..6741280hypothetical protein
LOC_Os08g11510OsAffx.29154.1.S1_at11/118+6745757..6746038hypothetical protein
LOC_Os08g11520OsAffx.29155.1.S1_at11/118+6747298..6748956hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53418.1.S1_at--692--8491Chr08:6725683..6725707 (25 bp)
TGGCTATGCCTCTGATATTCGCCGG
LOC_Os08g11470
Os.53418.1.S1_at--1018--1151Chr08:6725747..6725771 (25 bp)
AGTCATGACAACCATATCCTCTTAC
LOC_Os08g11470
Os.53418.1.S1_at--897--10471Chr08:6725768..6725792 (25 bp)
TTACAACACTTGCTTCCACTAGCAG
LOC_Os08g11470
Os.53418.1.S1_at--222--10191Chr08:6725859..6725883 (25 bp)
TATACTCACCTGTTATTTCCATAAG
LOC_Os08g11470
Os.53418.1.S1_at--817--5691Chr08:6725935..6725959 (25 bp)
GACTATATTTCTACCAGCCTTTTTT
LOC_Os08g11470
Os.53418.1.S1_at--1097--8571Chr08:6725967..6725991 (25 bp)
TGGTTCACTTAATGGCTCATCTTCC
LOC_Os08g11470
Os.53418.1.S1_at--723--3211Chr08:6725996..6726020 (25 bp)
CAAGTAAGGATTTCTGGCCCAGTTC
LOC_Os08g11470
Os.53418.1.S1_at--332--8411Chr08:6726011..6726035 (25 bp)
GGCCCAGTTCAGTACAGCAACATGT
LOC_Os08g11470
Os.53418.1.S1_at--827--8731Chr08:6726189..6726213 (25 bp)
TGTACGCACCAAGAGTCATCCTGAG
LOC_Os08g11470
Os.53418.1.S1_at--904--7991Chr08:6726277..6726301 (25 bp)
GGATGTGAAACTAGGTTCTCTCGAA
LOC_Os08g11470
Os.53418.1.S1_at--24--2711Chr08:6726327..6726351 (25 bp)
AAGCTCAATTACCATGCCATTCTTC
LOC_Os08g11470
Target Sequence 
TGGCTATGCCTCTGATATTCGCCGGCATGTACATGTTAAAGAGAAAAGGATAATTGGTCTGAAAAGTCATGACAACCATA
TCCTCTTACAACACTTGCTTCCACTAGCAGTACGAAAGACATTGCCAGAATATGTTAGTGCAGTATTGGTTCGTGTGAGT
AACTTCTTTAAGAAAATATACTCACCTGTTATTTCCATAAGTGATATGGAAAAGTTAGATGCTGAAATTGCTGAAACATT
AAGCCTTCTAGAGACTATATTTCTACCAGCCTTTTTTGATATTATGGTTCACTTAATGGCTCATCTTCCTACCCAAGTAA
GGATTTCTGGCCCAGTTCAGTACAGCAACATGTATCCAATAGAAAGGTTTCTAATGAGGTTAAAGGGATATGTACGCACC
AAGAGTCATCCTGAGGGATCAATTGCTGAAGGCTATTTGTTTGATGAGAGTCTTACATTTTGCTCTCGTTATTTAGAAGG
ATGTGAAACTAGGTTCTCTCGAAAATCCAGAACTAGTATAGATAAACCAAGCTCAATTACCATGCCATTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53418.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis