Browse Element(s) Details


Os.2708.2.S1_x_at

Description gb:AK063783.1
DB_XREF= gi:32973801
TID=Os.2708.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2708 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RNA binding protein (OSJNBa0004B24.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-D09, full insert sequence.
FL= gb:AK063783.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3727010/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37230NANA3+20584628..20586451hypothetical protein
LOC_Os03g37234NANA3+20589416..20590046retrotransposon, putative, centromere-specific
LOC_Os03g37240OsAffx.20354.1.S1_at1/113+20593339..20596268retrotransposon protein, putative, unclassified
LOC_Os03g37250OsAffx.13026.1.S1_at1/113+20596799..20604279retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g37260Os.34805.1.S1_at11/113+20604883..20607924pentatricopeptide, putative, expressed
LOC_Os03g37260Os.34805.2.S1_x_at7/113+20604883..20607924pentatricopeptide, putative, expressed
LOC_Os03g37270Os.2708.3.S1_at11/113+20609574..20615802RNA recognition motif family protein, expressed
LOC_Os03g37270Os.2708.1.S1_at11/113+20609574..20615802RNA recognition motif family protein, expressed
LOC_Os03g37270Os.2708.2.S1_at11/113+20609574..20615802RNA recognition motif family protein, expressed
LOC_Os03g37270Os.2708.2.S1_x_at10/113+20609574..20615802RNA recognition motif family protein, expressed
LOC_Os03g37290Os.27940.1.S1_at11/113+20620699..20625453Cytochrome P450 79A1, putative, expressed
LOC_Os03g37290Os.50043.1.A1_at1/113+20620699..20625453Cytochrome P450 79A1, putative, expressed
LOC_Os03g37320Os.54496.1.S1_x_at1/113+20632534..20643021expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2708.2.S1_x_at--86--2471NONE
AACAAGCTTTCAGTCCATATGGAGA
NONE
Os.2708.2.S1_x_at--475--3111Chr03:20610474..20610758 (25 bp)
AATATTCCAATAGGGCTTCAGCTGA
LOC_Os03g37270
Os.2708.2.S1_x_at--96--3031Chr03:20610251..20610275 (25 bp)
AATGCTGGCTATTATGGATATCCCC
LOC_Os03g37270
Os.2708.2.S1_x_at--759--271Chr03:20610210..20610234 (25 bp)
ATATGGTTATGTTCGGCCGCCTCAA
LOC_Os03g37270
Os.2708.2.S1_x_at--127--2811Chr03:20610187..20610211 (25 bp)
AAGATCCTGCCATGTACGCTTATGC
LOC_Os03g37270
Os.2708.2.S1_x_at--1132--5191Chr03:20610144..20610168 (25 bp)
GAATTATCAACAACCAGCGCCACAG
LOC_Os03g37270
Os.2708.2.S1_x_at--235--4211Chr03:20610115..20610139 (25 bp)
CCCCTCAACAGGTTAAGGCACTCTA
LOC_Os03g37270
Os.2708.2.S1_x_at--1093--911Chr03:20610100..20610124 (25 bp)
AGGCACTCTAGGATTCCACACTGGA
LOC_Os03g37270
Os.2708.2.S1_x_at--371--8211Chr03:20610072..20610096 (25 bp)
GGAATTTTACATTGCTTACTCTTGC
LOC_Os03g37270
Os.2708.2.S1_x_at--786--10391Chr03:20610017..20610041 (25 bp)
TTTTCCTTCCGCTTTTGCAGTAAGA
LOC_Os03g37270
Os.2708.2.S1_x_at--945--3211Chr03:20609991..20610015 (25 bp)
CAAGTGTTGGTCAAGTGCCCTATCA
LOC_Os03g37270
Target Sequence 
AACAAGCTTTCAGTCCATATGGAGAACTTGTCTACGTCAAAATACCTGTAGGAAAGCGTTGTGGATTTGTTCAATATTCC
AATAGGGCTTCAGCTGAGGAGGCCATAAGGATGCTAAATGGAAGCCAATTAGGAGGTCAGAGCATAAGGCTTTCATGGGG
TCGTAGCCCTGGAAACAAGCAGCCTCAGCAAGACCAGAACCAATGGAATGCTGGCTATTATGGATATCCCCCCCAAGGAT
ATGATCCATATGGTTATGTTCGGCCGCCTCAAGATCCTGCCATGTACGCTTATGCAGCATATCCTGGATACGGGAATTAT
CAACAACCAGCGCCACAGCAGCCCCCTCAACAGGTTAAGGCACTCTAGGATTCCACACTGGATATGGAATTTTACATTGC
TTACTCTTGCACAGATAAAAGTGACAGTTTTCTGTTTTTTTTTTCCTTCCGCTTTTGCAGTAAGAACAAGTGTTGGTCAA
GTGCCCTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2708.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis