Browse Element(s) Details


Os.54496.1.S1_x_at

Description gb:AK105356.1
DB_XREF= gi:32990565
TID=Os.54496.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54496 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-C05, full insert sequence.
FL= gb:AK105356.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g373201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37260Os.34805.1.S1_at11/113+20604883..20607924pentatricopeptide, putative, expressed
LOC_Os03g37260Os.34805.2.S1_x_at7/113+20604883..20607924pentatricopeptide, putative, expressed
LOC_Os03g37270Os.2708.3.S1_at11/113+20609574..20615802RNA recognition motif family protein, expressed
LOC_Os03g37270Os.2708.1.S1_at11/113+20609574..20615802RNA recognition motif family protein, expressed
LOC_Os03g37270Os.2708.2.S1_at11/113+20609574..20615802RNA recognition motif family protein, expressed
LOC_Os03g37270Os.2708.2.S1_x_at10/113+20609574..20615802RNA recognition motif family protein, expressed
LOC_Os03g37290Os.27940.1.S1_at11/113+20620699..20625453Cytochrome P450 79A1, putative, expressed
LOC_Os03g37290Os.50043.1.A1_at1/113+20620699..20625453Cytochrome P450 79A1, putative, expressed
LOC_Os03g37320Os.54496.1.S1_x_at1/113+20632534..20643021expressed protein
LOC_Os03g37330Os.20977.1.S1_at11/113+20645314..20647156KOW motif family protein, expressed
LOC_Os03g37330Os.20977.2.S1_x_at10/113+20645314..20647156KOW motif family protein, expressed
LOC_Os03g37340NANA3+20649706..20650735hypothetical protein
LOC_Os03g37350OsAffx.1638.1.S1_at11/113+20653240..20653921transposon protein, putative, Pong sub-class
LOC_Os03g37360OsAffx.13211.1.S1_at11/113+20661656..20664252hypothetical protein
LOC_Os03g37377Os.54774.1.S1_at2/113+20665866..20671716retrotransposon, putative, centromere-specific
LOC_Os03g37377Os.54774.1.S1_x_at2/113+20665866..20671716retrotransposon, putative, centromere-specific
LOC_Os03g37377Os.52447.1.S1_x_at1/113+20665866..20671716retrotransposon, putative, centromere-specific
LOC_Os03g37377OsAffx.13218.1.S1_at1/113+20665866..20671716retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54496.1.S1_x_at--770--8352Chr05:13289149..13289173 (25 bp)
GGCGGATCCATCACCGTTGGGCCGC
NONE
Os.54496.1.S1_x_at--459--4531Chr05:13289363..13289387 (25 bp)
GCCGCCGAGGCATCCTGAGGCATGA
NONE
Os.54496.1.S1_x_at--779--8271Chr05:13289371..13289395 (25 bp)
GGCATCCTGAGGCATGAATCCTAGA
NONE
Os.54496.1.S1_x_at--328--3711Chr05:13289391..13289415 (25 bp)
CTAGAGAGAGAGAACACTGCTGCTG
NONE
Os.54496.1.S1_x_at--531--5492Chr05:13289402..13289426 (25 bp)
GAACACTGCTGCTGCATGCATGGAT
NONE
Os.54496.1.S1_x_at--400--651Chr05:13289417..13289441 (25 bp)
ATGCATGGATGGTTTCAGTGAAGAG
NONE
Os.54496.1.S1_x_at--457--471Chr05:13289459..13289483 (25 bp)
ATCTGCTGATGACTTTGTGGGTGTA
NONE
Os.54496.1.S1_x_at--439--8791Chr05:13289499..13289523 (25 bp)
TGTTAATCTGTTTATGTGTTGTTGA
NONE
Os.54496.1.S1_x_at--714--7412Chr05:13289514..13289538 (25 bp)
GTGTTGTTGATGATGCCAATGTTGA
NONE
Os.54496.1.S1_x_at--977--6351Chr05:13289525..13289549 (25 bp)
GATGCCAATGTTGATTCTCTGTATT
NONE
Os.54496.1.S1_x_at--64--3211Chr05:13289530..13289554 (25 bp)
CAATGTTGATTCTCTGTATTTGGAT
NONE
Target Sequence 
GGCGGATCCATCACCGTTGGGCCGCGGGGAGGGCGGATCTGCCGCCGCCGCAGGGAGGGCGCCTCCACCGCCGCCTCCAA
CCTCGTCTTCTGGGCCGCACCACCACCACCCGCCGTCGCGTGCCCGCCTCCGCCGTGCGGTTCGACCGGCCCTCCGCGGT
GCTCCTGCTCCTGTCCGCGGCGGAGACGGGCTTGTGCAGGCCAGGGCGGTCGCCGCCGCCGAGGCATCCTGAGGCATGAA
TCCTAGAGAGAGAGAACACTGCTGCTGCATGCATGGATGGTTTCAGTGAAGAGCTTAACTAGATGTGATTATCTGCTGAT
GACTTTGTGGGTGTAAATCAGATTATGTGTTGTTAATCTGTTTATGTGTTGTTGATGATGCCAATGTTGATTCTCTGTAT
TTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54496.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis