Browse Element(s) Details


OsAffx.13211.1.S1_at

Description tigr:9631.m03580
TID=OsAffx.13211.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3736011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37320Os.54496.1.S1_x_at1/113+20632534..20643021expressed protein
LOC_Os03g37330Os.20977.1.S1_at11/113+20645314..20647156KOW motif family protein, expressed
LOC_Os03g37330Os.20977.2.S1_x_at10/113+20645314..20647156KOW motif family protein, expressed
LOC_Os03g37340NANA3+20649706..20650735hypothetical protein
LOC_Os03g37350OsAffx.1638.1.S1_at11/113+20653240..20653921transposon protein, putative, Pong sub-class
LOC_Os03g37360OsAffx.13211.1.S1_at11/113+20661656..20664252hypothetical protein
LOC_Os03g37377Os.54774.1.S1_at2/113+20665866..20671716retrotransposon, putative, centromere-specific
LOC_Os03g37377Os.54774.1.S1_x_at2/113+20665866..20671716retrotransposon, putative, centromere-specific
LOC_Os03g37377Os.52447.1.S1_x_at1/113+20665866..20671716retrotransposon, putative, centromere-specific
LOC_Os03g37377OsAffx.13218.1.S1_at1/113+20665866..20671716retrotransposon, putative, centromere-specific
LOC_Os03g37394NANA3+20673690..20678484retrotransposon protein, putative, unclassified
LOC_Os03g37411Os.54064.1.S1_at11/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411OsAffx.31069.5.S1_at5/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411Os.41248.2.A1_at4/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411OsAffx.31069.5.S1_x_at3/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411Os.41248.5.S1_x_at2/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411OsAffx.31069.2.S1_x_at1/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411Os.53479.1.S1_x_at1/113+20680018..20701948MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13211.1.S1_at--446--7811Chr03:20661661..20661685 (25 bp)
GGTCATGCGGCGACATGTCTCCGGC
LOC_Os03g37360
OsAffx.13211.1.S1_at--1151--7551Chr03:20661701..20661725 (25 bp)
GGGCGGCTTCAACGTACCACCACAT
LOC_Os03g37360
OsAffx.13211.1.S1_at--1088--6951Chr03:20661714..20661738 (25 bp)
GTACCACCACATCGAAGCAAGCTCA
LOC_Os03g37360
OsAffx.13211.1.S1_at--1046--1571Chr03:20661733..20661757 (25 bp)
AGCTCATGAGAAGATGGCGCCTTTC
LOC_Os03g37360
OsAffx.13211.1.S1_at--56--8191Chr03:20662436..20662460 (25 bp)
GGAAGCAGTCATATGTTGCCGACGT
LOC_Os03g37360
OsAffx.13211.1.S1_at--653--731Chr03:20662448..20662472 (25 bp)
ATGTTGCCGACGTGCAGATCTGGAG
LOC_Os03g37360
OsAffx.13211.1.S1_at--388--6413Chr06:9463695..9463719 (25 bp)
GATCTGGAGCTCGAAGGCTTTGCCT
NONE
OsAffx.13211.1.S1_at--73--1891Chr03:20662207..20662719 (25 bp)
ACGATGCAGGGTTCAAATCACGTTG
LOC_Os03g37360
OsAffx.13211.1.S1_at--850--5831Chr03:20662759..20662783 (25 bp)
GACCAACTGATTTAGGGTTCCAACG
LOC_Os03g37360
OsAffx.13211.1.S1_at--454--3931Chr03:20662808..20662832 (25 bp)
CGGCGACTGGCGACGATCCTGGATA
LOC_Os03g37360
OsAffx.13211.1.S1_at--365--5771Chr03:20662819..20662843 (25 bp)
GACGATCCTGGATACTGCAAGAGGG
LOC_Os03g37360
Target Sequence 
GGTCATGCGGCGACATGTCTCCGGCCAGCCACCGTGGCGGGGGCGGCTTCAACGTACCACCACATCGAAGCAAGCTCATG
AGAAGATGGCGCCTTTCTTGCTTGGTGCTTCTGGGGAAGCAGTCATATGTTGCCGACGTGCAGATCTGGAGCTCGAAGGC
TTTGCCTTAGCTGGGGTTGGGGCCGATGGAGGTGGCGCTGACGGGGCCAGTGGCTACATACAGAAGGGGGGAACGATGCA
GGGTTCAAATCACGTTGATATGGGGAAAACAAAATCAAATGTTGAAGAATCAATTCGACCAACTGATTTAGGGTTCCAAC
GTACCTCCTTCCGCCACGAGGACTCCGGCGACTGGCGACGATCCTGGATACTGCAAGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis