Browse Element(s) Details


Os.20977.1.S1_at

Description gb:AK069396.1
DB_XREF= gi:32979420
TID=Os.20977.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20977 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0004B24.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014K13, full insert sequence.
FL= gb:AK069396.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3733011/11KOW motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37290Os.27940.1.S1_at11/113+20620699..20625453Cytochrome P450 79A1, putative, expressed
LOC_Os03g37290Os.50043.1.A1_at1/113+20620699..20625453Cytochrome P450 79A1, putative, expressed
LOC_Os03g37320Os.54496.1.S1_x_at1/113+20632534..20643021expressed protein
LOC_Os03g37330Os.20977.1.S1_at11/113+20645314..20647156KOW motif family protein, expressed
LOC_Os03g37330Os.20977.2.S1_x_at10/113+20645314..20647156KOW motif family protein, expressed
LOC_Os03g37340NANA3+20649706..20650735hypothetical protein
LOC_Os03g37350OsAffx.1638.1.S1_at11/113+20653240..20653921transposon protein, putative, Pong sub-class
LOC_Os03g37360OsAffx.13211.1.S1_at11/113+20661656..20664252hypothetical protein
LOC_Os03g37377Os.54774.1.S1_at2/113+20665866..20671716retrotransposon, putative, centromere-specific
LOC_Os03g37377Os.54774.1.S1_x_at2/113+20665866..20671716retrotransposon, putative, centromere-specific
LOC_Os03g37377Os.52447.1.S1_x_at1/113+20665866..20671716retrotransposon, putative, centromere-specific
LOC_Os03g37377OsAffx.13218.1.S1_at1/113+20665866..20671716retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20977.1.S1_at--1061--3891Chr03:20645796..20645820 (25 bp)
CTGGTGCGTATTGTTAATGGAGCTT
LOC_Os03g37330
Os.20977.1.S1_at--824--5171Chr03:20645757..20645781 (25 bp)
GCAAGGTTGCTTTCAGTGGACACAG
LOC_Os03g37330
Os.20977.1.S1_at--7--8231Chr03:20645626..20645650 (25 bp)
GGAATTCCATCTTATTTCTGGAGCA
LOC_Os03g37330
Os.20977.1.S1_at--988--191Chr03:20645613..20645637 (25 bp)
ATTTCTGGAGCATTACTGCTGTCAA
LOC_Os03g37330
Os.20977.1.S1_at--489--4391Chr03:20645565..20645589 (25 bp)
GCCAATGTGTTGGACCTTTCTGTTA
LOC_Os03g37330
Os.20977.1.S1_at--923--5831Chr03:20645553..20645577 (25 bp)
GACCTTTCTGTTAGTTGCCTGACAA
LOC_Os03g37330
Os.20977.1.S1_at--864--3191Chr03:20645531..20645555 (25 bp)
CAATGTATGTGCTTGTGCTAGAATT
LOC_Os03g37330
Os.20977.1.S1_at--712--6731Chr03:20645505..20645529 (25 bp)
GTTCTATCGAATATCTTTCACATGT
LOC_Os03g37330
Os.20977.1.S1_at--89--8771Chr03:20645477..20645501 (25 bp)
TGTTTCTACTTTCTAGTTCTTCCTA
LOC_Os03g37330
Os.20977.1.S1_at--323--9251Chr03:20645457..20645481 (25 bp)
TCCTAGCTGCCGAAAGAACTCTGTG
LOC_Os03g37330
Os.20977.1.S1_at--1071--2431Chr03:20645428..20645452 (25 bp)
AAAATGGTCTGATGCTTTCTTGCTT
LOC_Os03g37330
Target Sequence 
CTGGTGCGTATTGTTAATGGAGCTTACCGGGGATCTAATGCAAGGTTGCTTTCAGTGGACACAGAGAGATTTTGTGCCNA
AGTGCAGGTTGAGAAGGGCCTCTATGATGGGAAGGTTCTTAAGGCCATTGAGTACGAGGACATTTGCAAGATTTTTCACT
GAGATATCATGGAATTCCATCTTATTTCTGGAGCATTACTGCTGTCAAATGTCAAACATATGACTATGCAAGCCAATGTG
TTGGACCTTTCTGTTAGTTGCCTGACAATGTATGTGCTTGTGCTAGAATTTGTTCTATCGAATATCTTTCACATGTTGAT
GTTTCTACTTTCTAGTTCTTCCTAGCTGCCGAAAGAACTCTGTGTAAGAAAATGGTCTGATGCTTTCTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20977.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis