Browse Element(s) Details


OsAffx.1638.1.S1_at

Description gb:NM_184790.1
DB_XREF= gi:34896669
TID=OsAffx.1638.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0004B24.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3735011/11transposon protein, putative, Pong sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37320Os.54496.1.S1_x_at1/113+20632534..20643021expressed protein
LOC_Os03g37330Os.20977.1.S1_at11/113+20645314..20647156KOW motif family protein, expressed
LOC_Os03g37330Os.20977.2.S1_x_at10/113+20645314..20647156KOW motif family protein, expressed
LOC_Os03g37340NANA3+20649706..20650735hypothetical protein
LOC_Os03g37350OsAffx.1638.1.S1_at11/113+20653240..20653921transposon protein, putative, Pong sub-class
LOC_Os03g37360OsAffx.13211.1.S1_at11/113+20661656..20664252hypothetical protein
LOC_Os03g37377Os.54774.1.S1_at2/113+20665866..20671716retrotransposon, putative, centromere-specific
LOC_Os03g37377Os.54774.1.S1_x_at2/113+20665866..20671716retrotransposon, putative, centromere-specific
LOC_Os03g37377Os.52447.1.S1_x_at1/113+20665866..20671716retrotransposon, putative, centromere-specific
LOC_Os03g37377OsAffx.13218.1.S1_at1/113+20665866..20671716retrotransposon, putative, centromere-specific
LOC_Os03g37394NANA3+20673690..20678484retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1638.1.S1_at--494--2751Chr03:20653894..20653918 (25 bp)
AAGAACGTGGATTCCCAGCAATGTT
LOC_Os03g37350
OsAffx.1638.1.S1_at--567--8791Chr03:20653690..20653714 (25 bp)
TGTTCTGAACCAATCCCCAATATTC
LOC_Os03g37350
OsAffx.1638.1.S1_at--1141--5671Chr03:20653605..20653629 (25 bp)
GACTTGGGTTACTATCTAGCCGATG
LOC_Os03g37350
OsAffx.1638.1.S1_at--607--5231Chr03:20653580..20653604 (25 bp)
GAATCTATCCAGAGTGGGCGACTAT
LOC_Os03g37350
OsAffx.1638.1.S1_at--759--2851Chr03:20653551..20653575 (25 bp)
AAGTCGATCCGACATCCTCAATTGG
LOC_Os03g37350
OsAffx.1638.1.S1_at--971--9051Chr03:20653471..20653495 (25 bp)
TGCATTTGGTTTACTCGGAGCTCGT
LOC_Os03g37350
OsAffx.1638.1.S1_at--660--5871Chr03:20653454..20653478 (25 bp)
GAGCTCGTTTCAAGGTGGTCGCGAC
LOC_Os03g37350
OsAffx.1638.1.S1_at--124--9331Chr03:20653436..20653460 (25 bp)
TCGCGACTACTACTCACTTATGGGA
LOC_Os03g37350
OsAffx.1638.1.S1_at--894--211Chr03:20653340..20653364 (25 bp)
ATTTGGACCCGCTGGATGCACATGA
LOC_Os03g37350
OsAffx.1638.1.S1_at--363--10731Chr03:20653295..20653319 (25 bp)
TTGAGCCACCGGAACATATGTACAG
LOC_Os03g37350
OsAffx.1638.1.S1_at--432--7031Chr03:20653276..20653300 (25 bp)
GTACAGTACACCGATACCAATGGCT
LOC_Os03g37350
Target Sequence 
AAGAACGTGGATTCCCAGCAATGTTGGGAAGCATTGATTGTATGCACTGGAGGTTCCAATAATGATATCAATGTTCTGAA
CCAATCCCCAATATTCACTGACATACTAATGGGGACATCAACAAGGCTGCGATACACAGTAAATGGAATTCAATATGACT
TGGGTTACTATCTAGCCGATGGAATCTATCCAGAGTGGGCGACTATTGTTAAGTCGATCCGACATCCTCAATTGGAGAAG
CACAAACTATTTGCTCAACAACAAGAATCAGCAAGGAAGGATGCCGAATGTGCATTTGGTTTACTCGGAGCTCGTTTCAA
GGTGGTCGCGACTACTACTCACTTATGGGAGCAATCAGACATATCCAATATAATGACAGCATGTATTATAATGTACAATA
TGATTGTAGAAGATGAAGGTCATTTGGACCCGCTGGATGCACATGAGTTTGAGGGTGACTATGAGATTGAGCCACCGGAA
CATATGTACAGTACACCGATACCAATGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis