Browse Element(s) Details


Os.27080.1.S1_at

Description gb:AK068280.1
DB_XREF= gi:32978298
TID=Os.27080.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27080 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013136H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013136H14, full insert sequence.
FL= gb:AK068280.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3645011/11Sugar transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36400OsAffx.24597.1.S1_at11/112+21981288..21985477Ubiquitin carboxyl-terminal hydrolase 4, putative, expressed
LOC_Os02g36414Os.50119.1.S1_at11/112+21989655..21996650Sugar transporter family protein, expressed
LOC_Os02g36430OsAffx.24598.1.S1_at11/112+21999875..22000123hypothetical protein
LOC_Os02g36440Os.53709.1.S1_at11/112+22001604..22006231Sugar transporter family protein, expressed
LOC_Os02g36450Os.27080.1.S1_at11/112+22007420..22011776Sugar transporter family protein, expressed
LOC_Os02g36460OsAffx.12373.1.S1_at11/112+22014757..22015109hypothetical protein
LOC_Os02g36470NANA2+22020210..22025828retrotransposon protein, putative, unclassified
LOC_Os02g36480NANA2+22026396..22028380hypothetical protein
LOC_Os02g36490Os.21243.1.S1_at11/112+22032795..22036110expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27080.1.S1_at--633--4871Chr02:22011199..22011223 (25 bp)
GCTATGCGTGTCATGGGTCCCGCTC
LOC_Os02g36450
Os.27080.1.S1_at--7--6851Chr02:22011551..22011575 (25 bp)
GTTTCGCGGCACGTGTCCATGCGGT
LOC_Os02g36450
Os.27080.1.S1_at--573--7271Chr02:22011565..22011589 (25 bp)
GTCCATGCGGTGGTGTACCTAGGAT
LOC_Os02g36450
Os.27080.1.S1_at--379--9971Chr02:22011580..22011604 (25 bp)
TACCTAGGATTTCGTTGAGCCCGGG
LOC_Os02g36450
Os.27080.1.S1_at--269--8411Chr02:22011604..22011628 (25 bp)
GGCCGAGCGTAATGGTTGTTCGAAA
LOC_Os02g36450
Os.27080.1.S1_at--925--6631Chr02:22011618..22011642 (25 bp)
GTTGTTCGAAACCATAAGCGCTACT
LOC_Os02g36450
Os.27080.1.S1_at--785--2671Chr02:22011633..22011657 (25 bp)
AAGCGCTACTAGGTGTAAGATATGC
LOC_Os02g36450
Os.27080.1.S1_at--479--9791Chr02:22011648..22011672 (25 bp)
TAAGATATGCTTGTTTAACGTTAAC
LOC_Os02g36450
Os.27080.1.S1_at--64--9712Chr02:22011663..22011687 (25 bp)
TAACGTTAACTAGCTGGTGGCCCGC
LOC_Os02g36450
Os.27080.1.S1_at--382--4592Chr11:1842486..1842507 (22 bp)
GCGCAATTGCGTGGCTAACACCTAA
NONE
Os.27080.1.S1_at--1141--7531Chr02:22011696..22011720 (25 bp)
GTGGCTAACACCTAAACAAAACATA
LOC_Os02g36450
Target Sequence 
GCTATGCGTGTCATGGGTCCCGCTCTCGTCGGTGGTCACCAGCGAGATCTTCCCNGCTGGAGGTGAGGTCGGCGGCGCTG
GGGCTGGGCGGCGCCATCTCGTCGGCGCTCACGTTCATGCAGTCGCAGTCGTTCTTGGAGATGCTGTGCAGCTTCAAGTA
CGGCGCGTTCGCCTACTACGCCGGATGGTTGGTGATGATGACGGCGTTCGTGGCGGCGTTCCTGCCGGAGACGAAGGGGG
TGCCGATCGAGTCCATGGGCGCGGTGTGGGCGCAGCATTGGTACTGGAAGCGCTTTGTCAAGCTGGCACCGGCCAAGCAG
GCCGATGGGCCAGAATGATGCGTTGGGAATCGGGTTTCGCGGCACGTGTCCATGCGGTGGTGTACCTAGGATTTCGTTGA
GCCCGGGGCCGAGCGTAATGGTTGTTCGAAACCATAAGCGCTACTAGGTGTAAGATATGCTTGTTTAACGTTAACTAGCT
GGTGGCCCGCGCAATTGCGTGGCTAACACCTAAACAAAACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis