Browse Element(s) Details


Os.21243.1.S1_at

Description gb:AK065365.1
DB_XREF= gi:32975383
TID=Os.21243.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.21243 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013003K19, full insert sequence.
FL= gb:AK103980.1 gb:AK065365.1 gb:AK059863.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3649011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36450Os.27080.1.S1_at11/112+22007420..22011776Sugar transporter family protein, expressed
LOC_Os02g36460OsAffx.12373.1.S1_at11/112+22014757..22015109hypothetical protein
LOC_Os02g36470NANA2+22020210..22025828retrotransposon protein, putative, unclassified
LOC_Os02g36480NANA2+22026396..22028380hypothetical protein
LOC_Os02g36490Os.21243.1.S1_at11/112+22032795..22036110expressed protein
LOC_Os02g36500Os.5798.1.S1_at10/112+22038030..22041031expressed protein
LOC_Os02g36510OsAffx.24599.1.S1_s_at11/112+22051059..22052742ETHYLENE-INSENSITIVE3-like 5 protein, putative, expressed
LOC_Os02g36510Os.55635.1.S1_at11/112+22051059..22052742ETHYLENE-INSENSITIVE3-like 5 protein, putative, expressed
LOC_Os02g36520Os.5656.1.S1_at11/112+22054965..22057498Kelch motif family protein, expressed
LOC_Os02g36530Os.50438.1.S1_at11/112+22059072..22059723expressed protein
LOC_Os02g36540OsAffx.24600.1.S1_at10/112+22059837..22061819hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015770biological_processsucrose transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008506molecular_functionsucrose:hydrogen symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21243.1.S1_at--415--8291Chr02:22033460..22033484 (25 bp)
GGCATTCTTGGGTCTGACTTCACAA
LOC_Os02g36490
Os.21243.1.S1_at--384--7431Chr02:22033273..22033409 (25 bp)
GTGTTTTGCCAGATCACAATCCCAT
LOC_Os02g36490
Os.21243.1.S1_at--369--5471Chr02:22033215..22033239 (25 bp)
GAACTCGGATACTGACGGGCTACAC
LOC_Os02g36490
Os.21243.1.S1_at--436--10791Chr02:22033129..22033153 (25 bp)
TTGTTCTGCACTATTCCTGGTATGA
LOC_Os02g36490
Os.21243.1.S1_at--946--1011Chr02:22033086..22033110 (25 bp)
AGGTTATCGGCATGGGTCTCTGTTT
LOC_Os02g36490
Os.21243.1.S1_at--369--9431Chr02:22033062..22033086 (25 bp)
TCGGGCTCTGCTTCGTGCAAATGCA
LOC_Os02g36490
Os.21243.1.S1_at--756--8991Chr02:22033011..22033035 (25 bp)
TGAAGAACGCCATCCTTGCATACTA
LOC_Os02g36490
Os.21243.1.S1_at--680--6231Chr02:22032930..22032954 (25 bp)
GATGGCTAGATGTCTGCCCGTTTTA
LOC_Os02g36490
Os.21243.1.S1_at--968--4531Chr02:22032915..22032939 (25 bp)
GCCCGTTTTACTGCTAGCGTTTGAT
LOC_Os02g36490
Os.21243.1.S1_at--565--631Chr02:22032880..22032904 (25 bp)
ATGCTCATTTTCTTTGCCTGTTCTG
LOC_Os02g36490
Os.21243.1.S1_at--624--1251Chr02:22032823..22032847 (25 bp)
AGATTCTCCCAAGCAGTTTCTGCGA
LOC_Os02g36490
Target Sequence 
GGCATTCTTGGGTCTGACTTCACAACAAAGCACCACGGACGGGAGGTCACATTCACCGTGAGCGCCATTCTGATGGTGTT
TTGCCAGATCACAATCCCATTGCTTGTGGAAGCGCAAATCGGGCTGGGCGGTGGAACTCGGATACTGACGGGCTACACCA
CGGCGACATTCCTGCTCACATGCGTCGTCTCCTATGGTCTCAGCTGGTCATGGGGCTCATTGTTCTGCACTATTCCTGGT
ATGAAGATTCAGTCAGCTGGGCAGGTTATCGGCATGGGTCTCTGTTTCGGGCTCTGCTTCGTGCAAATGCAGTACTTCCT
GCTGATGCTGTGCCGGCTGAAGAACGCCATCCTTGCATACTACGCAATGTGGATTTGGTCTTGATTTAAACTAGGATCTC
AAGAGAAGAGATGGGACAGATGGCTAGATGTCTGCCCGTTTTACTGCTAGCGTTTGATGGATGTAAATATGCTCATTTTC
TTTGCCTGTTCTGTACAGTTTTTGTATTGGTTGCTATCTCAGTGTAGATTCTCCCAAGCAGTTTCTGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21243.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis