Browse Element(s) Details


Os.55635.1.S1_at

Description gb:AK108451.1
DB_XREF= gi:32993660
TID=Os.55635.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55635 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-C09, full insert sequence.
FL= gb:AK108451.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3651011/11ETHYLENE-INSENSITIVE3-like 5 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36480NANA2+22026396..22028380hypothetical protein
LOC_Os02g36490Os.21243.1.S1_at11/112+22032795..22036110expressed protein
LOC_Os02g36500Os.5798.1.S1_at10/112+22038030..22041031expressed protein
LOC_Os02g36510OsAffx.24599.1.S1_s_at11/112+22051059..22052742ETHYLENE-INSENSITIVE3-like 5 protein, putative, expressed
LOC_Os02g36510Os.55635.1.S1_at11/112+22051059..22052742ETHYLENE-INSENSITIVE3-like 5 protein, putative, expressed
LOC_Os02g36520Os.5656.1.S1_at11/112+22054965..22057498Kelch motif family protein, expressed
LOC_Os02g36530Os.50438.1.S1_at11/112+22059072..22059723expressed protein
LOC_Os02g36540OsAffx.24600.1.S1_at10/112+22059837..22061819hypothetical protein
LOC_Os02g36550Os.49268.1.S1_at11/112+22062145..22064814DNA/pantothenate metabolism flavoprotein, expressed
LOC_Os02g36560OsAffx.2880.1.S1_at11/112+22068125..22068794hypothetical protein
LOC_Os02g36570Os.11616.1.S1_at10/112+22071618..22079406ABC1 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009723biological_processresponse to ethylene stimulus
GO:0009873biological_processethylene mediated signaling pathway
GO:0010182biological_processsugar mediated signaling
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55635.1.S1_at--630--9631Chr02:22052560..22052584 (25 bp)
TCATGGACGAGTGACGACGTGGCGC
LOC_Os02g36510
Os.55635.1.S1_at--1085--6071Chr02:22052568..22052592 (25 bp)
GAGTGACGACGTGGCGCCCTTGGGC
LOC_Os02g36510
Os.55635.1.S1_at--812--8691Chr02:22052602..22052626 (25 bp)
TGTCGCCGCGCGATTGTCCGGGTTT
LOC_Os02g36510
Os.55635.1.S1_at--87--3991Chr02:22052630..22052654 (25 bp)
CGGGAGAAGCTATAGTCAGGTTGAT
LOC_Os02g36510
Os.55635.1.S1_at--291--5971Chr02:22052633..22052657 (25 bp)
GAGAAGCTATAGTCAGGTTGATGCT
LOC_Os02g36510
Os.55635.1.S1_at--628--6651Chr02:22052649..22052673 (25 bp)
GTTGATGCTGCATTTGCTGGCGCTC
LOC_Os02g36510
Os.55635.1.S1_at--1028--611Chr02:22052653..22052677 (25 bp)
ATGCTGCATTTGCTGGCGCTCTAGT
LOC_Os02g36510
Os.55635.1.S1_at--31--211Chr02:22052660..22052684 (25 bp)
ATTTGCTGGCGCTCTAGTGCTGCTA
LOC_Os02g36510
Os.55635.1.S1_at--283--9131Chr02:22052663..22052687 (25 bp)
TGCTGGCGCTCTAGTGCTGCTACTA
LOC_Os02g36510
Os.55635.1.S1_at--1133--1991Chr02:22052684..22052708 (25 bp)
ACTAGCTAGTAGTACTGGTTAAACT
LOC_Os02g36510
Os.55635.1.S1_at--816--1212Chr09:21641920..21641950 (24 bp)
AGTTAATTAAGCATGTGCTGCTGCT
NONE
Target Sequence 
TCATGGACGAGTGACGACGTGGCGCCCTTGGGCCCCACCACGTGTCGCCGCGCGATTGTCCGGGTTTGGGCGGGAGAAGC
TATAGTCAGGTTGATGCTGCATTTGCTGGCGCTCTAGTGCTGCTACTAGCTAGTAGTACTGGTTAAACTAAGTTAATTAA
GCATGTGCTGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55635.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis