Browse Element(s) Details


Os.5798.1.S1_at

Description gb:AK059246.1
DB_XREF= gi:32969264
TID=Os.5798.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-G05, full insert sequence.
FL= gb:AK059246.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3650010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36460OsAffx.12373.1.S1_at11/112+22014757..22015109hypothetical protein
LOC_Os02g36470NANA2+22020210..22025828retrotransposon protein, putative, unclassified
LOC_Os02g36480NANA2+22026396..22028380hypothetical protein
LOC_Os02g36490Os.21243.1.S1_at11/112+22032795..22036110expressed protein
LOC_Os02g36500Os.5798.1.S1_at10/112+22038030..22041031expressed protein
LOC_Os02g36510OsAffx.24599.1.S1_s_at11/112+22051059..22052742ETHYLENE-INSENSITIVE3-like 5 protein, putative, expressed
LOC_Os02g36510Os.55635.1.S1_at11/112+22051059..22052742ETHYLENE-INSENSITIVE3-like 5 protein, putative, expressed
LOC_Os02g36520Os.5656.1.S1_at11/112+22054965..22057498Kelch motif family protein, expressed
LOC_Os02g36530Os.50438.1.S1_at11/112+22059072..22059723expressed protein
LOC_Os02g36540OsAffx.24600.1.S1_at10/112+22059837..22061819hypothetical protein
LOC_Os02g36550Os.49268.1.S1_at11/112+22062145..22064814DNA/pantothenate metabolism flavoprotein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5798.1.S1_at--79--10551Chr02:22038906..22038930 (25 bp)
TTCTAGACCCTTAGCTGCTCGTAAC
LOC_Os02g36500
Os.5798.1.S1_at--250--4771Chr02:22038890..22038914 (25 bp)
GCTCGTAACCTGGAGCTGCAGGGAA
LOC_Os02g36500
Os.5798.1.S1_at--311--10431Chr02:22038863..22038887 (25 bp)
TTAGATTTTGCGCTTCCACAACCAA
LOC_Os02g36500
Os.5798.1.S1_at--338--4491Chr02:22038436..22038460 (25 bp)
GCCGGAGGTCCGAGCAATATCATGT
LOC_Os02g36500
Os.5798.1.S1_at--547--9291Chr02:22038232..22038256 (25 bp)
TCCCGGGACTACTTCGGAGGCGTCA
LOC_Os02g36500
Os.5798.1.S1_at--185--4731Chr02:22038176..22038200 (25 bp)
GCTGGTCTGACGACTCGCCGGAAGA
LOC_Os02g36500
Os.5798.1.S1_at--14--10131Chr02:22038143..22038167 (25 bp)
TATGTAGTTTGTGGCCAGTCTGTGT
LOC_Os02g36500
Os.5798.1.S1_at--72--10151Chr02:22038103..22038127 (25 bp)
TATCCATCATTCGAGCGAGATTTGT
LOC_Os02g36500
Os.5798.1.S1_at--1004--10791Chr02:22038082..22038106 (25 bp)
TTGTTAGTTGTTGCATACTCACCTA
LOC_Os02g36500
Os.5798.1.S1_at--1061--9891Chr02:22038067..22038091 (25 bp)
TACTCACCTAAAGGGCTGGTCATTG
LOC_Os02g36500
Os.5798.1.S1_at--788--3651Chr02:22038030..22038054 (25 bp)
CTTCAAATACCATTCACTTCTCATC
NONE
Target Sequence 
TTCTAGACCCTTAGCTGCTCGTAACCTGGAGCTGCAGGGAAATTTAGATTTTGCGCTTCCACAACCAAGAAGCATTCACA
CTTCAGTTAAAGTATCCAATCCTGCCGGAGGTCCGAGCAATATCATGTTTGGGGAGGAGCCGGCGGTCAAGACCGCCNAA
NAAAATCCATAACCAGAAGTTCCATGAGTTGACGGGCAACAACATCTTCAAGGAAGAAGCTCCCCCAGGCTCGGNCGAGA
ANTCCCTGAGCACGGCGAAGCTCAAGGAGATGAGTGGCAGCAACATCTTCGNCGATGGGAAGGTGGCCTCCCGGGACTAC
TTCGGAGGCGTCAGGAAGCCTCCTGGCGGCGGGAGCAGCATCGCGCTGGTCTGACGACTCGCCGGAAGAGTNCTGAATAT
GTAGTTTGTGGCCAGTCTGTGTTTGTTGGCTGTNGTTTATCCATCATTCGAGCGAGATTTGTTAGTTGTTGCATACTCAC
CTAAAGGGCTGGTCATTGTTCATCTCCGAACTTCAAATACCATTCACTTCTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis