Browse Element(s) Details


Os.5656.1.S1_at

Description gb:AK073087.1
DB_XREF= gi:32983110
TID=Os.5656.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5656 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033023M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023M04, full insert sequence.
FL= gb:AK073087.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3652011/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36490Os.21243.1.S1_at11/112+22032795..22036110expressed protein
LOC_Os02g36500Os.5798.1.S1_at10/112+22038030..22041031expressed protein
LOC_Os02g36510OsAffx.24599.1.S1_s_at11/112+22051059..22052742ETHYLENE-INSENSITIVE3-like 5 protein, putative, expressed
LOC_Os02g36510Os.55635.1.S1_at11/112+22051059..22052742ETHYLENE-INSENSITIVE3-like 5 protein, putative, expressed
LOC_Os02g36520Os.5656.1.S1_at11/112+22054965..22057498Kelch motif family protein, expressed
LOC_Os02g36530Os.50438.1.S1_at11/112+22059072..22059723expressed protein
LOC_Os02g36540OsAffx.24600.1.S1_at10/112+22059837..22061819hypothetical protein
LOC_Os02g36550Os.49268.1.S1_at11/112+22062145..22064814DNA/pantothenate metabolism flavoprotein, expressed
LOC_Os02g36560OsAffx.2880.1.S1_at11/112+22068125..22068794hypothetical protein
LOC_Os02g36570Os.11616.1.S1_at10/112+22071618..22079406ABC1 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5656.1.S1_at--205--10371Chr02:22056978..22057002 (25 bp)
TTTTTACTTGCTGGCCTTCATGGAA
LOC_Os02g36520
Os.5656.1.S1_at--54--2351Chr02:22057121..22057145 (25 bp)
AAAGAACTTTGGGTCTGCTGAGCTT
LOC_Os02g36520
Os.5656.1.S1_at--697--7171Chr02:22057133..22057157 (25 bp)
GTCTGCTGAGCTTGTTAGTTGTCAA
LOC_Os02g36520
Os.5656.1.S1_at--812--1211Chr02:22057188..22057212 (25 bp)
AGTTACTGATGTTGGCATCCCGTGG
LOC_Os02g36520
Os.5656.1.S1_at--138--551Chr02:22057204..22057228 (25 bp)
ATCCCGTGGTTCAACTATCTTTTTG
LOC_Os02g36520
Os.5656.1.S1_at--892--2671Chr02:22057297..22057321 (25 bp)
AAGTTGATTCTTGCCCAAACACTGT
LOC_Os02g36520
Os.5656.1.S1_at--476--10291Chr02:22057383..22057407 (25 bp)
TTTCCAGCTGTTGAACCTTATCCAT
LOC_Os02g36520
Os.5656.1.S1_at--885--91Chr02:22057406..22057430 (25 bp)
ATTCTGCTATCAACTGTACACCATG
LOC_Os02g36520
Os.5656.1.S1_at--55--8691Chr02:22057438..22057462 (25 bp)
TGTGATCCTTTTGATCTTCTCTGCA
LOC_Os02g36520
Os.5656.1.S1_at--803--10571Chr02:22057454..22057478 (25 bp)
TTCTCTGCATGATTCTGATGCCTCT
LOC_Os02g36520
Os.5656.1.S1_at--85--4451Chr02:22057473..22057497 (25 bp)
GCCTCTTGTCCCACATATTTGGTGG
LOC_Os02g36520
Target Sequence 
TTTTTACTTGCTGGCCTTCATGGAAAGGTCCACGTTATTACAAAAGAGGCAAACAACAATCTTNAAGTTATGCAAGCTGN
ATTGCAGAATAACATTGANAACAGTCCATCTGAAGAAAACATCATATGGAACATACTGGCTTCAAAGAACTTTGGGTCTG
CTGAGCTTGTTAGTTGTCAAGTTCTTGATGTTTAAATGTGGGATAAATTCAGTTACTGATGTTGGCATCCCGTGGTTCAA
CTATCTTTTTGACTGATTGGATCTATAATTTGACAAGGGGAGAGATAGATATATAGATTACAGGTATTTAGATTTGTATA
AGTTGATTCTTGCCCAAACACTGTTATATAGGCCATAAGTATACATGATTACTGTATAGTTAGTGTTCTTGTACACATGG
AGAGATTTCCAGCTGTTGAACCTTATCCATTCTGCTATCAACTGTACACCATGAATTTGTTGTGATCCTTTTGATCTTCT
CTGCATGATTCTGATGCCTCTTGTCCCACATATTTGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5656.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis