Browse Element(s) Details


OsAffx.2880.1.S1_at

Description tigr:9630.m03491
TID=OsAffx.2880.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3656011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36510OsAffx.24599.1.S1_s_at11/112+22051059..22052742ETHYLENE-INSENSITIVE3-like 5 protein, putative, expressed
LOC_Os02g36510Os.55635.1.S1_at11/112+22051059..22052742ETHYLENE-INSENSITIVE3-like 5 protein, putative, expressed
LOC_Os02g36520Os.5656.1.S1_at11/112+22054965..22057498Kelch motif family protein, expressed
LOC_Os02g36530Os.50438.1.S1_at11/112+22059072..22059723expressed protein
LOC_Os02g36540OsAffx.24600.1.S1_at10/112+22059837..22061819hypothetical protein
LOC_Os02g36550Os.49268.1.S1_at11/112+22062145..22064814DNA/pantothenate metabolism flavoprotein, expressed
LOC_Os02g36560OsAffx.2880.1.S1_at11/112+22068125..22068794hypothetical protein
LOC_Os02g36570Os.11616.1.S1_at10/112+22071618..22079406ABC1 family protein, putative, expressed
LOC_Os02g36580OsAffx.2881.1.S1_at11/112+22084576..22085514hypothetical protein
LOC_Os02g36590Os.49182.1.S1_at6/112+22090135..22094871expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2880.1.S1_at--1054--4231Chr02:22068205..22068229 (25 bp)
CCGATCGTGCGCTCGTGACGTAGAC
LOC_Os02g36560
OsAffx.2880.1.S1_at--268--4031Chr02:22068223..22068247 (25 bp)
CGTAGACGGGATGGGATATGACACA
LOC_Os02g36560
OsAffx.2880.1.S1_at--520--10091Chr02:22068239..22068263 (25 bp)
TATGACACAGGGAGTATCCCCCGCT
LOC_Os02g36560
OsAffx.2880.1.S1_at--902--5791Chr02:22068493..22068517 (25 bp)
GACGCACGGCCGTCGGAGCTTGGCT
LOC_Os02g36560
OsAffx.2880.1.S1_at--134--5932Chr11:8720209..8720308 (25 bp)
GAGCTTGGCTCCCACTTCGCCGTGG
NONE
OsAffx.2880.1.S1_at--847--2051Chr02:22068521..22068545 (25 bp)
ACTTCGCCGTGGTAGCCTGCCAAGC
LOC_Os02g36560
OsAffx.2880.1.S1_at--378--9191Chr02:22068641..22068665 (25 bp)
TGCCAAGGCGGCTGTAAGTCTGACC
LOC_Os02g36560
OsAffx.2880.1.S1_at--619--2931Chr02:22068645..22068669 (25 bp)
AAGGCGGCTGTAAGTCTGACCCGGA
LOC_Os02g36560
OsAffx.2880.1.S1_at--881--4731Chr02:22068651..22068675 (25 bp)
GCTGTAAGTCTGACCCGGATGAACC
LOC_Os02g36560
OsAffx.2880.1.S1_at--529--3951Chr02:22068666..22068690 (25 bp)
CGGATGAACCGGTCGGCCGAATTTG
LOC_Os02g36560
OsAffx.2880.1.S1_at--1124--7791Chr02:22068676..22068700 (25 bp)
GGTCGGCCGAATTTGAGACCGCCTC
LOC_Os02g36560
Target Sequence 
CCGATCGTGCGCTCGTGACGTAGACGGGATGGGATATGACACAGGGAGTATCCCCCGCTTTGCCTCCTCGCATGCACGCC
GCTGGCGACGCACGGCCGTCGGAGCTTGGCTCCCACTTCGCCGTGGTAGCCTGCCAAGCTCCCCCTTCGCCGGCGTCCCC
CTTTGTAGAGACCCGCCGCCGCAGCTGGTGGCACCGGCGGCGGAGATGGCGTGCCGCAGCGGCCCCGCCGAGGTTGCCAA
GGCGGCTGTAAGTCTGACCCGGATGAACCGGTCGGCCGAATTTGAGACCGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2880.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis