Browse Element(s) Details


Os.11616.1.S1_at

Description gb:AK099974.1
DB_XREF= gi:32985183
TID=Os.11616.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11616 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013128D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128D08, full insert sequence.
FL= gb:AK058407.1 gb:AK099974.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3657010/11ABC1 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36510OsAffx.24599.1.S1_s_at11/112+22051059..22052742ETHYLENE-INSENSITIVE3-like 5 protein, putative, expressed
LOC_Os02g36510Os.55635.1.S1_at11/112+22051059..22052742ETHYLENE-INSENSITIVE3-like 5 protein, putative, expressed
LOC_Os02g36520Os.5656.1.S1_at11/112+22054965..22057498Kelch motif family protein, expressed
LOC_Os02g36530Os.50438.1.S1_at11/112+22059072..22059723expressed protein
LOC_Os02g36540OsAffx.24600.1.S1_at10/112+22059837..22061819hypothetical protein
LOC_Os02g36550Os.49268.1.S1_at11/112+22062145..22064814DNA/pantothenate metabolism flavoprotein, expressed
LOC_Os02g36560OsAffx.2880.1.S1_at11/112+22068125..22068794hypothetical protein
LOC_Os02g36570Os.11616.1.S1_at10/112+22071618..22079406ABC1 family protein, putative, expressed
LOC_Os02g36580OsAffx.2881.1.S1_at11/112+22084576..22085514hypothetical protein
LOC_Os02g36590Os.49182.1.S1_at6/112+22090135..22094871expressed protein
LOC_Os02g36600Os.25572.1.S1_at9/112+22096619..22099255Aldose 1-epimerase family protein, expressed
LOC_Os02g36619Os.54149.1.S1_at11/112+22104271..22111787Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g36619Os.47073.1.S1_at1/112+22104271..22111787Exo70 exocyst complex subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11616.1.S1_at--156--2211Chr02:22078854..22078878 (25 bp)
ACAAGTCCTTGTCGGCCTTTTGAAG
LOC_Os02g36570
Os.11616.1.S1_at--727--6011Chr02:22078900..22078924 (25 bp)
GAGAGACTGATAACCGGCACTGCTT
LOC_Os02g36570
Os.11616.1.S1_at--396--8251Chr02:22078915..22078939 (25 bp)
GGCACTGCTTGAGTCCGGGCATAAA
LOC_Os02g36570
Os.11616.1.S1_at--1035--1951Chr02:22078939..22078963 (25 bp)
ACTGGTGAGAGCTGACCCGTGATTT
LOC_Os02g36570
Os.11616.1.S1_at--339--10251Chr02:22078965..22078989 (25 bp)
TTTGGTGTCATCCACAGCGGCTATA
LOC_Os02g36570
Os.11616.1.S1_at--593--4871Chr02:22078984..22079008 (25 bp)
GCTATATATCTTCCCCGTTTTTTGT
LOC_Os02g36570
Os.11616.1.S1_at--935--171Chr02:22079023..22079047 (25 bp)
ATTTTAGATCCCCTACACGTTGTAG
LOC_Os02g36570
Os.11616.1.S1_at--384--4031Chr02:22079040..22079064 (25 bp)
CGTTGTAGCATAGCCATCGGTGTAC
LOC_Os02g36570
Os.11616.1.S1_at--496--7873Chr11:4894910..4894929 (20 bp)
GGTTTGTTTGGTTTGCTACCATGTC
NONE
Os.11616.1.S1_at--537--6931Chr02:22079290..22079314 (25 bp)
GTAGTGCTAACATCTTGTCTGATTG
LOC_Os02g36570
Os.11616.1.S1_at--1095--9771Chr02:22079383..22079407 (25 bp)
TAAGGGCACAATTTGATCGACTTCA
NONE
Target Sequence 
ACAAGTCCTTGTCGGCCTTTTGAAGGTCAAGAAGTTGGATCAACAGGAGAGACTGATAACCGGCACTGCTTGAGTCCGGG
CATAAACTGGTGAGAGCTGACCCGTGATTTTTTTGGTGTCATCCACAGCGGCTATATATCTTCCCCGTTTTTTGTTTCTT
TCTGTCCAAATTTTAGATCCCCTACACGTTGTAGCATAGCCATCGGTGTACGATAACTGTATATGTAGATGCGGTGAATA
GATGAAAATGTACATAGTGTACAATAGACATTCACTGAGGTGTTAAGGTGCTTTTGTGGTTGCAATTCAATCTTAAATCT
CTCAGATGAAATGAGATGAANNNANNAGAGGAAGTAATAGATGCAATGCAATACGGGTTTGTTTGGTTTGCTACCATGTC
AAAATGTTAGTGATGTCAAAACCTAAACAAGTTTTTGTAGTGCTAACATCTTGTCTGATTGTGTATGTTATCGGTATATT
CCGATAGCAAATCAAACATTATCAAAAGTACTATTCAAAGTGTCAGTAATAAGGGCACAATTTGATCGACTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11616.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis