Browse Element(s) Details


Os.25572.1.S1_at

Description gb:AK109600.1
DB_XREF= gi:32994809
TID=Os.25572.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25572 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-E04, full insert sequence.
FL= gb:AK109600.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g366009/11Aldose 1-epimerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36570Os.11616.1.S1_at10/112+22071618..22079406ABC1 family protein, putative, expressed
LOC_Os02g36580OsAffx.2881.1.S1_at11/112+22084576..22085514hypothetical protein
LOC_Os02g36590Os.49182.1.S1_at6/112+22090135..22094871expressed protein
LOC_Os02g36600Os.25572.1.S1_at9/112+22096619..22099255Aldose 1-epimerase family protein, expressed
LOC_Os02g36619Os.54149.1.S1_at11/112+22104271..22111787Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g36619Os.47073.1.S1_at1/112+22104271..22111787Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g36640OsAffx.22699.1.S1_x_at1/112+22115688..22121634retrotransposon protein, putative, unclassified
LOC_Os02g36640OsAffx.18375.1.S1_at1/112+22115688..22121634retrotransposon protein, putative, unclassified
LOC_Os02g36650Os.27066.1.A1_x_at1/112+22122353..22125524hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006012biological_processgalactose metabolism
GO:0004034molecular_functionaldose 1-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25572.1.S1_at--879--7811Chr02:22098684..22098708 (25 bp)
GGTACGACACCAATTACGCCGTGGA
LOC_Os02g36600
Os.25572.1.S1_at--337--9031Chr02:22098813..22098837 (25 bp)
TGCAGTTCTACACGAGCAACGGGCT
LOC_Os02g36600
Os.25572.1.S1_at--760--8251Chr02:22098960..22098984 (25 bp)
GGCAGGTGTACGAGCACAACATGGT
LOC_Os02g36600
Os.25572.1.S1_at--609--8611Chr02:22098981..22099005 (25 bp)
TGGTGTTCAAGTTCACCTTCTAGTG
LOC_Os02g36600
Os.25572.1.S1_at--248--10811Chr02:22099011..22099035 (25 bp)
TTGGGCGGACCGTACGTAGCAGCAT
LOC_Os02g36600
Os.25572.1.S1_at--393--6951Chr02:22099026..22099050 (25 bp)
GTAGCAGCATCCGATCCGTGCATGC
LOC_Os02g36600
Os.25572.1.S1_at--10--3951Chr02:22099054..22099078 (25 bp)
CGGCTGGTCGGATGTGTACTGTCAC
LOC_Os02g36600
Os.25572.1.S1_at--638--7091Chr02:22099074..22099098 (25 bp)
GTCACGTTGAGACCTGTAGTCCTGT
LOC_Os02g36600
Os.25572.1.S1_at--444--7191NONE
GTCGACGGTGACTTCAGTACCGGAA
NONE
Os.25572.1.S1_at--809--1771NONE
ACCGGAAGTCGGAACTGCTAGCTGT
NONE
Os.25572.1.S1_at--219--5031Chr02:22099224..22099248 (25 bp)
GCAGTTCTTTAATCACAACCTCTTC
LOC_Os02g36600
Target Sequence 
GGTACGACACCAATTACGCCGTGGACGGCGCCGCAGCCGACGGCGAGCGGCGGCGGCTCCGGCCGGTGGCGGAGGTCCGC
GACGGCGCGACGGGGCGGGCGATGGAGGTGTGGGCGGACCAGCCGGGGGTGCAGTTCTACACGAGCAACGGGCTCGCCGG
CGTGCGCGGCAAGGGCGGGAGGGTGTACGGCCGGTACGGCGCGCTGTGCTTGGAGACGCAGGGGTTCCCCGACGCCGTGA
ACCACCCGAGCTTCCCGTCGCAGATCGTCCGGCCGGGGCAGGTGTACGAGCACAACATGGTGTTCAAGTTCACCTTCTAG
TGNGCACTTGGGCGGACCGTACGTAGCAGCATCCGATCCGTGCATGCGTGCGGCTGGTCGGATGTGTACTGTCACGTTGA
GACCTGTAGTCCTGTACTGAAAAGGAATAATGGCGTGCGCTTGTTNCTTTGCTCCANNNANNANNNNNNNNAANCAGTAA
AGGGTCGACGGTGACTTCAGTACCGGAAGTCGGAACTGCTAGCTGTGTGGGGAGTTTGTTGCAGTTCTTTAATCACAACC
TCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis