Browse Element(s) Details


Os.54149.1.S1_at

Description gb:AK102188.1
DB_XREF= gi:32987397
TID=Os.54149.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54149 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086P19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086P19, full insert sequence.
FL= gb:AK102188.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3661911/11Exo70 exocyst complex subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36570Os.11616.1.S1_at10/112+22071618..22079406ABC1 family protein, putative, expressed
LOC_Os02g36580OsAffx.2881.1.S1_at11/112+22084576..22085514hypothetical protein
LOC_Os02g36590Os.49182.1.S1_at6/112+22090135..22094871expressed protein
LOC_Os02g36600Os.25572.1.S1_at9/112+22096619..22099255Aldose 1-epimerase family protein, expressed
LOC_Os02g36619Os.54149.1.S1_at11/112+22104271..22111787Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g36619Os.47073.1.S1_at1/112+22104271..22111787Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g36640OsAffx.22699.1.S1_x_at1/112+22115688..22121634retrotransposon protein, putative, unclassified
LOC_Os02g36640OsAffx.18375.1.S1_at1/112+22115688..22121634retrotransposon protein, putative, unclassified
LOC_Os02g36650Os.27066.1.A1_x_at1/112+22122353..22125524hypothetical protein
LOC_Os02g36660NANA2+22127207..22127503retrotransposon, putative, centromere-specific
LOC_Os02g36670OsAffx.2883.1.S1_at11/112+22129647..22131075hypothetical protein
LOC_Os02g36680Os.8220.1.S1_at10/112+22134763..22136125expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54149.1.S1_at--743--10251Chr02:22111196..22111220 (25 bp)
TTTGTGGCCACATCAATTGTTTGAC
LOC_Os02g36619
Os.54149.1.S1_at--180--9771Chr02:22111277..22111301 (25 bp)
TAATCCTAATGTCCGCCTGAAGTTG
LOC_Os02g36619
Os.54149.1.S1_at--622--7371Chr02:22111303..22111327 (25 bp)
GTGAGGCAATCATCCAGAAACTTAT
LOC_Os02g36619
Os.54149.1.S1_at--722--8071Chr02:22111394..22111418 (25 bp)
GGAGCAGCTGGAGTCACAACTTCTA
LOC_Os02g36619
Os.54149.1.S1_at--746--251Chr02:22111519..22111543 (25 bp)
ATATCGACGAGTTTGCTTGCGCAAT
LOC_Os02g36619
Os.54149.1.S1_at--36--2451Chr02:22111546..22111570 (25 bp)
AAAATTCAGCTTTCCTTTTCACTGC
LOC_Os02g36619
Os.54149.1.S1_at--827--4931Chr02:22111569..22111593 (25 bp)
GCTTGGCTCAGCAATCAGATGTTCG
LOC_Os02g36619
Os.54149.1.S1_at--226--1311Chr02:22111585..22111609 (25 bp)
AGATGTTCGTTGCTACCTGTGTTAT
LOC_Os02g36619
Os.54149.1.S1_at--732--7791Chr02:22111612..22111636 (25 bp)
GGTCCACCGTTGTCTGTGATGTCAA
LOC_Os02g36619
Os.54149.1.S1_at--707--851Chr02:22111638..22111662 (25 bp)
ATGGCTTCTTACTTAGGCTGGATCC
LOC_Os02g36619
Os.54149.1.S1_at--580--911Chr02:22111652..22111676 (25 bp)
AGGCTGGATCCTTTAGTTCTATTTA
LOC_Os02g36619
Target Sequence 
TTTGTGGCCACATCAATTGTTTGACAAGTTTAATTCTTCTTTCGAGAGGATCTACAGTGTACAAAAGACTTGGAAGGTGA
CTAATCCTAATGTCCGCCTGAAGTTGCGTGAGGCAATCATCCAGAAACTTATCCCAGTTTATCAAATGCAGATGGGAAAC
CAATCAGAGAAGAAACAAATGTCAGCGAGGTACAGTGTGGAGCAGCTGGAGTCACAACTTCTAGAAATGTTTGAGGGCTG
AAGCCTGAAGGCATAAAGATCACATAATACAGTAATACACATTTGTCCGATATCGTGGATGAAGCAGATTTCAGTGATCA
ACAATATCGACGAGTTTGCTTGCGCAATCTAAAATTCAGCTTTCCTTTTCACTGCTTGGCTCAGCAATCAGATGTTCGTT
GCTACCTGTGTTATCTGGTCCACCGTTGTCTGTGATGTCAATATGGCTTCTTACTTAGGCTGGATCCTTTAGTTCTATTT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54149.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis