Browse Element(s) Details


Os.47073.1.S1_at

Description gb:BI803907
DB_XREF= gi:16576611
DB_XREF=H121G07
CLONE=H121G07
TID=Os.47073.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47073 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g366191/11Exo70 exocyst complex subunit family protein, expressed
LOC_Os08g171101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36570Os.11616.1.S1_at10/112+22071618..22079406ABC1 family protein, putative, expressed
LOC_Os02g36580OsAffx.2881.1.S1_at11/112+22084576..22085514hypothetical protein
LOC_Os02g36590Os.49182.1.S1_at6/112+22090135..22094871expressed protein
LOC_Os02g36600Os.25572.1.S1_at9/112+22096619..22099255Aldose 1-epimerase family protein, expressed
LOC_Os02g36619Os.54149.1.S1_at11/112+22104271..22111787Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g36619Os.47073.1.S1_at1/112+22104271..22111787Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g36640OsAffx.22699.1.S1_x_at1/112+22115688..22121634retrotransposon protein, putative, unclassified
LOC_Os02g36640OsAffx.18375.1.S1_at1/112+22115688..22121634retrotransposon protein, putative, unclassified
LOC_Os02g36650Os.27066.1.A1_x_at1/112+22122353..22125524hypothetical protein
LOC_Os02g36660NANA2+22127207..22127503retrotransposon, putative, centromere-specific
LOC_Os02g36670OsAffx.2883.1.S1_at11/112+22129647..22131075hypothetical protein
LOC_Os02g36680Os.8220.1.S1_at10/112+22134763..22136125expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47073.1.S1_at--274--1891NONE
ACGATCAAATGTAGGCGTGGGTATC
NONE
Os.47073.1.S1_at--743--10071NONE
TAGGCGTGGGTATCCATGTCCAATA
NONE
Os.47073.1.S1_at--180--911NONE
AGGCGTGGGTATCCATGTCCAATAT
NONE
Os.47073.1.S1_at--246--8371NONE
GGCGTGGGTATCCATGTCCAATATT
NONE
Os.47073.1.S1_at--167--4672Chr10:20041614..20041795 (25 bp)
GCGTGGGTATCCATGTCCAATATTT
NONE
Os.47073.1.S1_at--735--3991NONE
CGTGGGTATCCATGTCCAATATTTG
NONE
Os.47073.1.S1_at--411--7492Chr07:7112111..7112130 (20 bp)
GTGGGTATCCATGTCCAATATTTGA
NONE
Os.47073.1.S1_at--431--7691NONE
GGGTATCCATGTCCAATATTTGATC
NONE
Os.47073.1.S1_at--329--6911Chr08:10461684..10461994 (25 bp)
GTATCCATGTCCAATATTTGATCGT
LOC_Os08g17110
Os.47073.1.S1_at--754--572Chr10:15497150..15497169 (20 bp)
ATCCATGTCCAATATTTGATCGTCC
NONE
Os.47073.1.S1_at--957--4331NONE
CCATGTCCAATATTTGATCGTCCGT
NONE
Target Sequence 
ACGATCAAATGTAGGCGTGGGTATCCATGTCCAATATTTGATCGTCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis