Browse Element(s) Details


Os.27099.1.S1_at

Description gb:AK067467.1
DB_XREF= gi:32977485
TID=Os.27099.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27099 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013104F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013104F01, full insert sequence.
FL= gb:AK067467.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2182011/11Protein kinase domain containing protein, expressed
LOC_Os04g217904/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21790OsAffx.8678.1.S1_at11/114+12318721..12323927Protein kinase domain containing protein
LOC_Os04g21790Os.27099.1.S1_at4/114+12318721..12323927Protein kinase domain containing protein
LOC_Os04g21800OsAffx.6468.1.S1_at8/114+12326068..12327692retrotransposon protein, putative, LINE subclass
LOC_Os04g21800OsAffx.6468.1.S1_x_at4/114+12326068..12327692retrotransposon protein, putative, LINE subclass
LOC_Os04g21810NANA4+12334394..12334996transposon protein, putative, unclassified
LOC_Os04g21820Os.27099.1.S1_at11/114+12339714..12344921Protein kinase domain containing protein, expressed
LOC_Os04g21830NANA4+12350982..12352670hypothetical protein
LOC_Os04g21840OsAffx.3849.1.S1_at11/114+12354545..12354991hypothetical protein
LOC_Os04g21850NANA4+12357314..12357610hypothetical protein
LOC_Os04g21860Os.25411.1.A1_at11/114+12360704..12362603transposon protein, putative, Pong sub-class, expressed
LOC_Os04g21870NANA4+12363087..12364439transposon protein, putative, Pong sub-class
LOC_Os04g21880OsAffx.26088.1.S1_at10/114+12367980..12370159hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27099.1.S1_at--30--251Chr04:12344415..12344439 (25 bp)
ATATAGTGGCTGATCAAGTTCTTGA
LOC_Os04g21820
Os.27099.1.S1_at--853--131Chr04:12344459..12344483 (25 bp)
ATTAACAATGTTGCCTCTCTTGCGG
LOC_Os04g21820
Os.27099.1.S1_at--1021--4452Chr04:12344471..12344495 (25 bp)
GCCTCTCTTGCGGAAGATTGCTTGA
LOC_Os04g21820
Os.27099.1.S1_at--813--1251Chr04:12344485..12344509 (25 bp)
AGATTGCTTGAGTCTACGACGGGAT
LOC_Os04g21820
Os.27099.1.S1_at--283--6252Chr04:12344605..12344629 (25 bp)
GATGGATCCCTTTATTATGACAAAA
LOC_Os04g21820
Os.27099.1.S1_at--398--2731Chr04:12344676..12344700 (25 bp)
AAGCAACTATATCGTCCTATCAGCC
LOC_Os04g21820
Os.27099.1.S1_at--901--3912Chr04:12344700..12344724 (25 bp)
CTGGCTTGGAGCACGAGTTTATGTC
LOC_Os04g21820
Os.27099.1.S1_at--164--1212Chr04:12344715..12344739 (25 bp)
AGTTTATGTCATCTGCCACTATACC
LOC_Os04g21820
Os.27099.1.S1_at--1088--4391Chr04:12344729..12344753 (25 bp)
GCCACTATACCACGCTAGAATTTAT
LOC_Os04g21820
Os.27099.1.S1_at--485--10291Chr04:12344758..12344782 (25 bp)
TTTCCAGTTCTGTGCTAGGCCATGA
LOC_Os04g21820
Os.27099.1.S1_at--696--6971Chr04:12344816..12344840 (25 bp)
GTACCTTCAATATACTGCACGTTTT
LOC_Os04g21820
Target Sequence 
ATATAGTGGCTGATCAAGTTCTTGAGGAAGCAACCGAGGAAGAAATTAACAATGTTGCCTCTCTTGCGGAAGATTGCTTG
AGTCTACGACGGGATGAAAGACCTACTATGAAGCAAGTTGAGTTGGCACTACAGTTTTTGNTAAACAAAAGGNTGAATTC
ATNCCGCACTGTTGAAGCAAACAAGGAAGAGATGGATCCCTTTATTATGACAAAAGTTCAACATAGCACTGAGAATTCAA
ATGTTGAATTTNTGAGCAATAAAGCAACTATATCGTCCTATCAGCCTGGCTTGGAGCACGAGTTTATGTCATCTGCCACT
ATACCACGCTAGAATTTATTCAGTTTCCAGTTCTGTGCTAGGCCATGATGCCTGTTGTTTCTCTTGACAATGTGAGATAA
TGTACCTTCAATATACTGCACGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27099.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis