CREP Browser

Os.27155.1.S1_at

Description

gb:AK068185.1
DB_XREF= gi:32978203
TID=Os.27155.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27155 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013135C17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135C17, full insert sequence.
FL= gb:AK068185.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g15170	9/11	very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os09g18159	1/11	Protein kinase domain containing protein, expressed
LOC_Os12g18860	1/11	expressed protein
LOC_Os06g15020	1/11	fatty acid condensing enzyme CUT1, putative

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g15120	Os.53142.1.S1_at	3/11	6	+	8577722..8578476	transposon protein, putative, unclassified
LOC_Os06g15130	NA	NA	6	+	8580248..8580841	transposon protein, putative, unclassified
LOC_Os06g15140	NA	NA	6	+	8582517..8583044	transposon protein, putative, unclassified
LOC_Os06g15150	NA	NA	6	+	8583739..8589596	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15160	OsAffx.22896.1.S1_x_at	1/11	6	+	8590631..8591158	transposon protein, putative, unclassified
LOC_Os06g15170	Os.27155.1.S1_at	9/11	6	+	8597145..8598913	very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os06g15180	Os.14491.2.S1_x_at	2/11	6	+	8600270..8601527	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15180	Os.47463.1.S1_x_at	2/11	6	+	8600270..8601527	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15180	Os.41934.1.A1_x_at	1/11	6	+	8600270..8601527	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15190	NA	NA	6	+	8605070..8607444	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15200	OsAffx.8731.1.S1_at	1/11	6	+	8610138..8613561	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15200	OsAffx.940.1.S1_x_at	1/11	6	+	8610138..8613561	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15210	NA	NA	6	+	8618081..8619373	hypothetical protein
LOC_Os06g15220	OsAffx.27644.1.S1_at	11/11	6	+	8621594..8622472	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0000038	biological_process	very-long-chain fatty acid metabolism
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0010025	biological_process	wax biosynthesis
GO:0030497	biological_process	fatty acid elongation
GO:0042335	biological_process	cuticle biosynthesis
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0008415	molecular_function	acyltransferase activity
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.27155.1.S1_at--240--163	2	Chr06:8511413..8511437 (25 bp)	AGCGGCAGGGTCAAGCCGTACATCC	LOC_Os06g15020
Os.27155.1.S1_at--479--949	1	Chr06:8597596..8597620 (25 bp)	TCTGCCTCTCGGACGAGCAGGTGCA	LOC_Os06g15170
Os.27155.1.S1_at--711--747	1	Chr06:8597379..8597403 (25 bp)	GTGGGCCACGTCGATCCACAGGTAT	LOC_Os06g15170
Os.27155.1.S1_at--47--191	1	Chr06:8597372..8597396 (25 bp)	ACGTCGATCCACAGGTATCCGGTGG	LOC_Os06g15170
Os.27155.1.S1_at--940--209	1	Chr06:8597362..8597386 (25 bp)	ACAGGTATCCGGTGGACATTCCCGA	LOC_Os06g15170
Os.27155.1.S1_at--873--55	1	Chr06:8597356..8597380 (25 bp)	ATCCGGTGGACATTCCCGACGTGCT	LOC_Os06g15170
Os.27155.1.S1_at--373--971	1	Chr06:8597332..8597356 (25 bp)	TCAAGCACTAGGAAGACACGGCATC	LOC_Os06g15170
Os.27155.1.S1_at--915--707	1	Chr06:8597264..8597288 (25 bp)	GTAATATTCCTGTTTAGTGTGTGTG	LOC_Os06g15170
Os.27155.1.S1_at--788--913	13	Chr09:3672071..3672095 (25 bp)	TGCGTTCTTTCCACAAGTTTCCCAA	NONE
Os.27155.1.S1_at--3--369	1	NONE	CTTTCCCTGGTTTTCTGAGTGCACG	NONE
Os.27155.1.S1_at--1109--787	1	NONE	GGTTTTCTGAGTGCACGCTTTTCAA	NONE

Target Sequence

AGCGGCAGGGTCAAGCCGTACATCCCGGACTTCCGCGCGGCGTTCGAGCACTTCTGCATCCACGCCGGCGGGCGGGCGGT
GATCGACGAGCTGCAGCGCAGCCTCTGCCTCTCGGACGAGCAGGTGCAGGCGTCGCGGATGGCGCTCCACCGNATTCGGG
AACACGTCGAGCAGCTCGGTGTGGTACGAGCTGGCCTACGTNGAGGCCAAGGGACGCATGCNCCGCGGCGACCGCGTGTG
GATGATCGGNTTCGGCTCCGGTTTCAAGTGCAACAGCGCGGCGTGGGAGTGCATNTCGCCGGCGCGNGANGACGACGGGC
CGTGGGCCACGTCGATCCACAGGTATCCGGTGGACATTCCCGACGTGCTCAAGCACTAGGAAGACACGGCATCGNTGTCC
TTNTGAATAATTCAGTGTTAATTAAAACAGNAAAACNTGTAATATTCCTGTTTAGTGTGTGTGNGAGGCTGCGTTCTTTC
CACAAGTTTCCCAACCCCTTTCCCTGGTTTTCTGAGTGCACGCTTTTCAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis

Browse Element(s) Details