Browse Element(s) Details


Os.27176.1.S1_at

Description gb:AK101182.1
DB_XREF= gi:32986391
TID=Os.27176.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27176 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033029F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033029F08, full insert sequence.
FL= gb:AK061433.1 gb:AK101182.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2835411/11HSF-type DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28320OsAffx.30064.1.S1_at11/119+17195184..17196285hypothetical protein
LOC_Os09g28330Os.35344.18.S1_x_at8/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28330Os.35344.3.S1_x_at8/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28330OsAffx.22940.5.S1_x_at5/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28330OsAffx.22940.5.S1_at5/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28340Os.6007.1.S1_at11/119+17206463..17208026expressed protein
LOC_Os09g28354Os.27176.1.S1_at11/119+17220425..17227957HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g28354Os.26442.1.S1_at1/119+17220425..17227957HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g28370Os.53550.1.S1_at11/119+17230297..17242998retrotransposon protein, putative, LINE subclass, expressed
LOC_Os09g28370OsAffx.12117.1.S1_at2/119+17230297..17242998retrotransposon protein, putative, LINE subclass, expressed
LOC_Os09g28380NANA9+17243666..17243968hypothetical protein
LOC_Os09g28390NANA9+17251028..17254513Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27176.1.S1_at--463--3391Chr09:17227522..17227546 (25 bp)
CAGCGAGCGGCCGATCAAGATGATC
LOC_Os09g28354
Os.27176.1.S1_at--540--5871Chr09:17227556..17227580 (25 bp)
GAGCCGTGGGTCAGCGTTCCATCGT
LOC_Os09g28354
Os.27176.1.S1_at--574--5331Chr09:17227611..17227635 (25 bp)
GAAGTCCAAACTTGTGCATGCCACG
LOC_Os09g28354
Os.27176.1.S1_at--633--6391Chr09:17227646..17227670 (25 bp)
GATCGACCAGGCGAACGGCAAGCAG
LOC_Os09g28354
Os.27176.1.S1_at--865--5271Chr09:17227699..17227723 (25 bp)
GAATGGTCCGATCAACCAAGTCATT
LOC_Os09g28354
Os.27176.1.S1_at--126--1871Chr09:17227731..17227755 (25 bp)
ACGAGACGAATTAAGCACGCCAAAT
LOC_Os09g28354
Os.27176.1.S1_at--411--311Chr09:17227754..17227778 (25 bp)
ATACGTGCGGCCCTGTGTTAATCAC
LOC_Os09g28354
Os.27176.1.S1_at--953--9731Chr09:17227772..17227796 (25 bp)
TAATCACGGGTTGCTACCATGCTAG
LOC_Os09g28354
Os.27176.1.S1_at--422--5391Chr09:17227840..17227864 (25 bp)
GAAGCAGCCGGCTCTTGTGTCTGGA
LOC_Os09g28354
Os.27176.1.S1_at--783--7451Chr09:17227856..17227880 (25 bp)
GTGTCTGGACGTTGTTTCAGTTAAC
LOC_Os09g28354
Os.27176.1.S1_at--89--5571Chr09:17227884..17227908 (25 bp)
GAAAGCTTCACCTTACTATGGATTA
LOC_Os09g28354
Target Sequence 
CAGCGAGCGGCCGATCAAGATGATCAGGATCGGCGAGCCGTGGGTCAGCGTTCCATCGTCGGGGCCGGCGCGGTGTGGCG
GCGACAACTGAAGTCCAAACTTGTGCATGCCACGGCCATGACCTGATCGACCAGGCGAACGGCAAGCAGAAGGCATGCAT
GGTGAGGTTGGTGGCAAGAATGGTCCGATCAACCAAGTCATTAGGTAAAACGAGACGAATTAAGCACGCCAAATACGTGC
GGCCCTGTGTTAATCACGGGTTGCTACCATGCTAGTAGTAAGGTAGGAACAGTACGAGGAGTCAAGGCTGACCGAAGCGA
AGCAGCCGGCTCTTGTGTCTGGACGTTGTTTCAGTTAACNNTGAAAGCTTCACCTTACTATGGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis