Browse Element(s) Details


Os.2720.1.S1_at

Description gb:CB673327
DB_XREF= gi:29677052
DB_XREF=OSJNEe07M19.r
CLONE=OSJNEe07M19
TID=Os.2720.1
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.2720 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative nucleic acid binding protein (OSJNBa0027P10.5), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4144011/11KH domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41390Os.46804.1.S2_x_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.1.S1_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.2.S1_at10/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41400Os.56265.1.S1_at11/1110+21925094..21927446Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os10g41400Os.8003.1.S1_at9/1110+21925094..21927446Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os10g41410Os.2715.1.S1_at11/1110+21928264..21930749Nucleoside diphosphate kinase 1, putative, expressed
LOC_Os10g41420NANA10+21932185..21932823expressed protein
LOC_Os10g41430Os.46852.1.S1_at11/1110+21938911..21940946Cyclin, N-terminal domain containing protein, expressed
LOC_Os10g41440Os.2720.1.S1_at11/1110+21944875..21948320KH domain-containing protein, putative, expressed
LOC_Os10g41450Os.52788.1.S1_at10/1110+21948992..21951672mediator complex subunit SOH1, putative, expressed
LOC_Os10g41460Os.22666.1.S1_at11/1110+21954678..21956227expressed protein
LOC_Os10g41470Os.12785.1.S1_at11/1110+21958726..2195969760S ribosomal protein L27, putative, expressed
LOC_Os10g41480Os.46823.1.S1_at11/1110+21960256..21963877Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os10g41480Os.46823.2.S1_x_at11/1110+21960256..21963877Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os10g41490Os.3401.1.S1_at11/1110+21965068..21967958Serine/threonine-protein kinase SAPK3, putative, expressed
LOC_Os10g41510Os.22461.1.S1_at11/1110+21969211..21978935Calcineurin B-like protein 9, putative, expressed
LOC_Os10g41510OsAffx.18720.1.S1_at3/1110+21969211..21978935Calcineurin B-like protein 9, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009911biological_processpositive regulation of flower development
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2720.1.S1_at--1043--9171Chr10:21947648..21947762 (25 bp)
TGCCTATCAACTCATCCAGGATTCT
LOC_Os10g41440
Os.2720.1.S1_at--338--10591Chr10:21947759..21947783 (25 bp)
TTCTCTGGCGGCACATAGGGATTCT
LOC_Os10g41440
Os.2720.1.S1_at--953--10511Chr10:21947831..21947855 (25 bp)
TTCACAGTATGGCAGCTCGACCTAT
LOC_Os10g41440
Os.2720.1.S1_at--439--7211Chr10:21947861..21947885 (25 bp)
GTCGTCATTGCCATCGTATTCTAGC
LOC_Os10g41440
Os.2720.1.S1_at--361--231Chr10:21947900..21947924 (25 bp)
ATATTCGTCTTCAGGTCTCGGTGGA
LOC_Os10g41440
Os.2720.1.S1_at--594--6491Chr10:21947923..21947947 (25 bp)
GATATGGGTCATCTTACCGGTACTA
LOC_Os10g41440
Os.2720.1.S1_at--65--6811Chr10:21948022..21948046 (25 bp)
GTTTTGATGGCTTTTGTTCTTCTCG
LOC_Os10g41440
Os.2720.1.S1_at--332--10571Chr10:21948041..21948065 (25 bp)
TTCTCGGCTGTAGTCCTGCAGAAAT
LOC_Os10g41440
Os.2720.1.S1_at--973--5031Chr10:21948058..21948082 (25 bp)
GCAGAAATCATTGTGTCCCGGCAAA
LOC_Os10g41440
Os.2720.1.S1_at--1063--5651Chr10:21948113..21948137 (25 bp)
GACAGGGCATGTGGTTTATATCTCA
LOC_Os10g41440
Os.2720.1.S1_at--693--3011Chr10:21948236..21948260 (25 bp)
AATGCACGTGTTATGTTCATCCAAT
LOC_Os10g41440
Target Sequence 
TGCCTATCAACTCATCCAGGATTCTCTGGCGGCACATAGGGATTCTGTCAGGAGCAGCTATGCAGGATTAGATCCAGTAT
ATAGGCCAAGCTATTCACAGTATGGCAGCTCGACCTATCCGTCGTCGTCATTGCCATCGTATTCTAGCATGGATGGGGNN
GGATATTCGTCTTCAGGTCTCGGTGGATATGGGTCATCTTACCGGTACTAAGCAGTTAGTCGATAGGCTTGTTGCCGCCC
TGTATCCATCCCTGGGCCATCCTTGTACTGAGCCAGCAATAGATGTTTTGATGGCTTTTGTTCTTCTCGGCTGTAGTCCT
GCAGAAATCATTGTGTCCCGGCAAATGTTTTTGGTATATCTGCTTTTGTTAGTGTGACAGGGCATGTGGTTTATATCTCA
TCATGGAAAGATGCCCCTAATTTTTCATAGTTTAGTTGCATTTTTTGTGATTNTTATGGTTGTGTGGTNTACCTGTTTGT
GTTGAAAACGGNATGAGTCAATGCACGTGTTATGTTCATCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2720.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis