Browse Element(s) Details


Os.27238.1.S1_at

Description gb:AK071408.1
DB_XREF= gi:32981431
TID=Os.27238.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27238 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative speckle-type protein (OSJNBa0072A12.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023093D23, full insert sequence.
FL= gb:AK071408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2897011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28930OsAffx.20329.1.S1_at11/1110+14744833..14749245retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g28950Os.47999.2.A1_x_at2/1110+14758792..14765757retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g28950Os.47999.3.A1_x_at1/1110+14758792..14765757retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g28950Os.45173.1.S1_x_at1/1110+14758792..14765757retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g28960NANA10+14771388..14771741hypothetical protein
LOC_Os10g28970Os.27238.1.S1_at11/1110+14772867..14774601BTB/POZ domain containing protein, expressed
LOC_Os10g28980OsAffx.18434.1.S1_at11/1110+14777309..14778351BTB/POZ domain containing protein, expressed
LOC_Os10g28990NANA10+14781122..14786814transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29000NANA10+14787559..14787819transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29010NANA10+14789248..14792157transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29020Os.24931.1.S1_at11/1110+14794995..14796062MATH domain containing protein
LOC_Os10g29020Os.46854.1.S1_x_at1/1110+14794995..14796062MATH domain containing protein
LOC_Os10g29020Os.46854.2.S1_x_at1/1110+14794995..14796062MATH domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27238.1.S1_at--122--7732Chr10:14774026..14774050 (25 bp)
GGTGGCTTCGAGTATCTGTCCAACA
LOC_Os10g28970
Os.27238.1.S1_at--280--2231Chr10:14774048..14774072 (25 bp)
ACAAGTGCCCGTCTATCTTGAGGGA
LOC_Os10g28970
Os.27238.1.S1_at--34--4071Chr10:14774081..14774105 (25 bp)
CGAGGCTTGCTGACTTTGATTTGAA
LOC_Os10g28970
Os.27238.1.S1_at--197--1992Chr10:14774138..14774162 (25 bp)
ACTCTGTTAAACTAGCTACCCATGG
LOC_Os10g28970
Os.27238.1.S1_at--809--8211Chr10:14774161..14774185 (25 bp)
GGAATTCAGATCCTCTGCTGTGGAG
LOC_Os10g28970
Os.27238.1.S1_at--505--4951Chr10:14774194..14774218 (25 bp)
GCATAGGTGCTATAGTGCCCGGTAT
LOC_Os10g28970
Os.27238.1.S1_at--442--10091Chr10:14774219..14774243 (25 bp)
TAGGAGAACTGTGGACCGTCCGATC
LOC_Os10g28970
Os.27238.1.S1_at--172--6471Chr10:14774260..14774284 (25 bp)
GATAAGGCGCTGCTACAGTACTGCC
LOC_Os10g28970
Os.27238.1.S1_at--866--5171Chr10:14774309..14774333 (25 bp)
GCAATGAGGACCCATGACCCGATAC
LOC_Os10g28970
Os.27238.1.S1_at--362--6731Chr10:14774368..14774392 (25 bp)
GTTCTAACTCTTATATCCATGGGTC
LOC_Os10g28970
Os.27238.1.S1_at--985--9751Chr10:14774502..14774526 (25 bp)
TAAGTCCCCACTACTACTAAATCAT
LOC_Os10g28970
Target Sequence 
GGTGGCTTCGAGTATCTGTCCAACAAGTGCCCGTCTATCTTGAGGGAGCTAATCGCGAGGCTTGCTGACTTTGATTTGAA
GAACGATGGGTAAATTTCGCAAAATTACAAATACTCTGTTAAACTAGCTACCCATGGAATTCAGATCCTCTGCTGTGGAG
GAGAAAATGCATAGGTGCTATAGTGCCCGGTATTAGGAGAACTGTGGACCGTCCGATCGAGGACGGATGGACAAGATAAG
GCGCTGCTACAGTACTGCCATCCCTGTAGGTGCAGTAGAGATGGCAATGAGGACCCATGACCCGATACCCGACGGGTCTN
NTACTCTATTGGAAGCTAATCATGTTCTAACTCTTATATCCATGGGTCTATTGACGAACGAAAACTTTTACCCATTGGGT
ACATTCTTTACCCACCCATACCCACCAACCCGTGGGTGAAAAAAACCCGTAGATTGAGTCTAAGACTATAAGTAATATAA
GTCCCCACTACTACTAAATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis