Browse Element(s) Details


OsAffx.18434.1.S1_at

Description tigr:9638.m02466
TID=OsAffx.18434.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=snRNP protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2898011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28950Os.47999.2.A1_x_at2/1110+14758792..14765757retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g28950Os.47999.3.A1_x_at1/1110+14758792..14765757retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g28950Os.45173.1.S1_x_at1/1110+14758792..14765757retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g28960NANA10+14771388..14771741hypothetical protein
LOC_Os10g28970Os.27238.1.S1_at11/1110+14772867..14774601BTB/POZ domain containing protein, expressed
LOC_Os10g28980OsAffx.18434.1.S1_at11/1110+14777309..14778351BTB/POZ domain containing protein, expressed
LOC_Os10g28990NANA10+14781122..14786814transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29000NANA10+14787559..14787819transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29010NANA10+14789248..14792157transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29020Os.24931.1.S1_at11/1110+14794995..14796062MATH domain containing protein
LOC_Os10g29020Os.46854.1.S1_x_at1/1110+14794995..14796062MATH domain containing protein
LOC_Os10g29020Os.46854.2.S1_x_at1/1110+14794995..14796062MATH domain containing protein
LOC_Os10g29040Os.43567.1.S1_x_at1/1110+14803088..14806229hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18434.1.S1_at--826--9331Chr10:14777355..14777379 (25 bp)
TCGCCGTGCCGTTGCCGGAGCTGAA
LOC_Os10g28980
OsAffx.18434.1.S1_at--823--4031Chr10:14777364..14777388 (25 bp)
CGTTGCCGGAGCTGAACAGGGACAT
LOC_Os10g28980
OsAffx.18434.1.S1_at--1044--2111Chr10:14777385..14777409 (25 bp)
ACATGGAGGCGCTCCTCCAGAGCGA
LOC_Os10g28980
OsAffx.18434.1.S1_at--503--7611Chr10:14777627..14778067 (25 bp)
GGGAAGGATCAGGATGAGACCTCAT
LOC_Os10g28980
OsAffx.18434.1.S1_at--219--8911Chr10:14778058..14778081 (24 bp)
TGAGACCTCATCCATGGCGCAGCAT
LOC_Os10g28980
OsAffx.18434.1.S1_at--886--7331Chr10:14778144..14778168 (25 bp)
GTGCAAGCGGATAGACGTGAGCTCC
LOC_Os10g28980
OsAffx.18434.1.S1_at--501--7951Chr10:14778152..14778176 (25 bp)
GGATAGACGTGAGCTCCGCCGCGAC
LOC_Os10g28980
OsAffx.18434.1.S1_at--1016--2731Chr10:14778217..14778241 (25 bp)
AAGAAGGCGTGCATGGATTTCCTCT
LOC_Os10g28980
OsAffx.18434.1.S1_at--555--811Chr10:14778229..14778253 (25 bp)
ATGGATTTCCTCTACTCACCCGGGA
LOC_Os10g28980
OsAffx.18434.1.S1_at--501--9891Chr10:14778241..14778265 (25 bp)
TACTCACCCGGGAATCTCAAGGCAG
LOC_Os10g28980
OsAffx.18434.1.S1_at--423--811Chr10:14778278..14778302 (25 bp)
ATGGGTTTGAGCATCTGGCCACAAG
LOC_Os10g28980
Target Sequence 
TCGCCGTGCCGTTGCCGGAGCTGAACAGGGACATGGAGGCGCTCCTCCAGAGCGAGGAGGGCGCCGACGTGACGTTCGAG
GTCGGCGGCGAGTCGTTCGCCGCGCACAGGTGCGTGCTCGCCGCCCGGTCGTCGGTGTTCCGGGCGGAGCTCTTCGGCGC
CATGAAGGAGAGCACCGCCGGCGGCGGCAAGGCGCGCGTGGACGGCGTCGAGGCGCGGGCGTTCAAGGCGCTCCTCCACT
TCATATACACGGACGCGGCGCCGGAGTTGGACGGGAAGGATCAGGATGAGACCTCATCCATGGCGCAGCATCTGCTCGTC
GCGGCGGACAGGTACAACCTGGAGAGGCTGAAGCTGATCTGCGAGGACAAGCTGTGCAAGCGGATAGACGTGAGCTCCGC
CGCGACCACGCTGGCGCTGGCTGAGCAGCACCGCTGCCCGAGCTTGAAGAAGGCGTGCATGGATTTCCTCTACTCACCCG
GGAATCTCAAGGCAGTGGAGGCGACGGATGGGTTTGAGCATCTGGCCACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis