Browse Element(s) Details


Os.27247.1.S1_at

Description gb:AK065261.1
DB_XREF= gi:32975279
TID=Os.27247.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27247 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002J21, full insert sequence.
FL= gb:AK065261.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5095011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50910Os.48137.1.A1_at11/116+30796115..30814785Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910Os.49175.1.S1_at11/116+30796115..30814785Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910Os.24117.1.A1_at1/116+30796115..30814785Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910OsAffx.31869.4.S1_x_at1/116+30796115..30814785Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50920Os.53650.1.S1_at11/116+30816442..30822355protein kinase family protein, putative, expressed
LOC_Os06g50930Os.11287.1.S1_at11/116+30822453..30824784Senescence-associated protein DIN1, putative, expressed
LOC_Os06g50940Os.56682.1.S1_at11/116+30827275..30829400GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g50950Os.27247.1.S1_at11/116+30837055..30838936GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g50960Os.47341.1.A1_at11/116+30845362..30846881Pollen allergen family protein, expressed
LOC_Os06g50970OsAffx.28201.1.S1_s_at11/116+30847400..30849740expressed protein
LOC_Os06g50980OsAffx.28202.1.S1_at11/116+30854272..30855123hypothetical protein
LOC_Os06g50990OsAffx.28203.1.S1_at10/116+30856610..30858465hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27247.1.S1_at--299--2171Chr06:30837538..30837562 (25 bp)
ACACCAGCGTTGACGCCGCGTGCTG
LOC_Os06g50950
Os.27247.1.S1_at--1017--951Chr06:30837487..30837511 (25 bp)
AGGACTGCCAGGTGGGCTCCACGCT
LOC_Os06g50950
Os.27247.1.S1_at--705--1771Chr06:30837454..30837478 (25 bp)
ACCGCGACAAGTGGGCCTTCTGGGA
LOC_Os06g50950
Os.27247.1.S1_at--833--2211Chr06:30837448..30837472 (25 bp)
ACAAGTGGGCCTTCTGGGACCGCGT
LOC_Os06g50950
Os.27247.1.S1_at--667--4051Chr06:30837329..30837353 (25 bp)
CGCACCACTGCTTAATTACGGACTA
LOC_Os06g50950
Os.27247.1.S1_at--1144--5651Chr06:30837309..30837333 (25 bp)
GACTACTACGTACTCTTATTTTATT
LOC_Os06g50950
Os.27247.1.S1_at--314--7431Chr06:30837279..30837303 (25 bp)
GTGTATATTCAGCTAGCAAATTCAA
LOC_Os06g50950
Os.27247.1.S1_at--860--10251Chr06:30837218..30837242 (25 bp)
TTTGTTCATGTATGCATATGCGTTG
LOC_Os06g50950
Os.27247.1.S1_at--535--4591Chr06:30837179..30837203 (25 bp)
GCGAAGCAGTGTGTACCAGGAATGA
LOC_Os06g50950
Os.27247.1.S1_at--724--4331Chr06:30837164..30837188 (25 bp)
CCAGGAATGAACGTACACACAAATT
LOC_Os06g50950
Os.27247.1.S1_at--450--512Chr07:22422330..22422350 (21 bp)
ATCGATTTGAGGATTCGGAGATATC
NONE
Target Sequence 
ACACCAGCGTTGACGCCGCGTGCTGCGGGAGCGGGAGGCTGGGCGCGGAGGAGGACTGCCAGGTGGGCTCCACGCTCTGC
GCCGACCGCGACAAGTGGGCCTTCTGGGACCGCGTCCACCCCTCGCAGAGGGCCACCATGCTCAGCGCCGCGGCCTACCA
CGACGGCCCGGCCCAATTAACCAAGCCCATCAACTTCAAACAGCTCGCCCGCACCACTGCTTAATTACGGACTACTACGT
ACTCTTATTTTATTTGTTAGTGTATATTCAGCTAGCAAATTCAATTCACTCAATATGAGAGCATCGTAATGTAATATATA
TTTGTTCATGTATGCATATGCGTTGATTTTTCTTTTGGGGCGAAGCAGTGTGTACCAGGAATGAACGTACACACAAATTT
TGATTTTTTTTCTAAAGAAATTGTGATGTAATTTTTTTTAGAATTTGTGATGTATTTGGAGATGATCGATTTGAGGATTC
GGAGATATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27247.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis