Browse Element(s) Details


Os.27252.1.S1_a_at

Description gb:AK100618.1
DB_XREF= gi:32985827
TID=Os.27252.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27252 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108E10, full insert sequence.
FL= gb:AK100618.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4192011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41890NANA12+25927204..25930524Amino acid permease family protein
LOC_Os12g41900Os.8820.1.S1_a_at11/1112+25933833..25942444SET domain containing protein, expressed
LOC_Os12g41900Os.8820.1.S2_a_at9/1112+25933833..25942444SET domain containing protein, expressed
LOC_Os12g41910NANA12+25944283..25949410transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g41920Os.27252.1.S1_a_at11/1112+25950908..25954370Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g41930Os.47922.1.S2_x_at11/1112+25956467..25959555SRP40, C-terminal domain containing protein, expressed
LOC_Os12g41930Os.47922.1.S1_x_at11/1112+25956467..25959555SRP40, C-terminal domain containing protein, expressed
LOC_Os12g41930OsAffx.7859.1.S1_at11/1112+25956467..25959555SRP40, C-terminal domain containing protein, expressed
LOC_Os12g41940Os.57136.1.S1_at10/1112+25964821..25968018Remorin, C-terminal region family protein, expressed
LOC_Os12g41950Os.22272.1.S1_at10/1112+25968764..25974737Auxin response factor 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27252.1.S1_a_at--1022--8331Chr12:25951881..25951905 (25 bp)
GGCTGAAGCCGAAGCTGCAGTAAGA
LOC_Os12g41920
Os.27252.1.S1_a_at--812--4071Chr12:25951422..25951446 (25 bp)
CGAGCTTGAAGCTACCTGTGGGAGC
LOC_Os12g41920
Os.27252.1.S1_a_at--1049--8071Chr12:25951402..25951426 (25 bp)
GGAGCTGGTGCAGCATCAGTTTCCT
LOC_Os12g41920
Os.27252.1.S1_a_at--208--3171Chr12:25951238..25951262 (25 bp)
AATTGCACCGCATCTGCTGAATTTG
LOC_Os12g41920
Os.27252.1.S1_a_at--754--2451Chr12:25951211..25951235 (25 bp)
AACAATTTTGTTACGCCTGGATCTG
LOC_Os12g41920
Os.27252.1.S1_a_at--1103--8551Chr12:25951194..25951218 (25 bp)
TGGATCTGCACAGGCATTGCGGCTA
LOC_Os12g41920
Os.27252.1.S1_a_at--587--10711Chr12:25951178..25951202 (25 bp)
TTGCGGCTACGGCATCTTTTGACTC
LOC_Os12g41920
Os.27252.1.S1_a_at--852--5711Chr12:25951158..25951182 (25 bp)
GACTCGCTCATGGTAGTAACCCACA
LOC_Os12g41920
Os.27252.1.S1_a_at--690--1171Chr12:25951101..25951125 (25 bp)
AGTACATCATGGTTATCCCCATTCC
LOC_Os12g41920
Os.27252.1.S1_a_at--358--7071Chr12:25951063..25951087 (25 bp)
GTAATTCACCTTGTAATCGGTTTTG
LOC_Os12g41920
Os.27252.1.S1_a_at--1140--7171Chr12:25950982..25951006 (25 bp)
GTCTGGTTGACTGGTTCACTTCATT
LOC_Os12g41920
Target Sequence 
GGCTGAAGCCGAAGCTGCAGTAAGAGAAGCAGAGGCTGCAGAAGCTGATGCTGTAGCTGCNCAAGCTTTCGCGGAGGCAG
CAATGGCAACATTTAAAAACAGAAGTTCAGCAAAATTGATCATTCGAGCTTGAAGCTACCTGTGGGAGCTGGTGCAGCAT
CAGTTTCCTCCGACCTTGTTAACCAAATTGCCCAAAGCCCCAAACTGGAATTGCACCGCATCTGCTGAATTTGCCAACAA
TTTTGTTACGCCTGGATCTGCACAGGCATTGCGGCTACGGCATCTTTTGACTCGCTCATGGTAGTAACCCACATATGCTG
GGATAATCAGGGAGTGACCAGTAGAAGTACATCATGGTTATCCCCATTCCTCCTTGGGTGATTGTAATTCACCTTGTAAT
CGGTTTTGGCATCAAATAATCAGAGTATTGCGTTGTTGTTGCATGTACAGATGTAACAGTGTGTGTCTGGTTGACTGGTT
CACTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27252.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis