Browse Element(s) Details


Os.27264.1.A1_at

Description gb:AK105412.1
DB_XREF= gi:32990621
TID=Os.27264.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27264 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0445H04.30 (P0445H04.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G08, full insert sequence.
FL= gb:AK101958.1 gb:AK105412.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g472009/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g586601/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47150NANA1+27274266..27278693retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g47160Os.31312.5.S1_x_at6/111+27282848..27285874retrotransposon protein, putative, unclassified
LOC_Os01g47160Os.31312.2.S1_x_at1/111+27282848..27285874retrotransposon protein, putative, unclassified
LOC_Os01g47170NANA1+27286777..27292940retrotransposon protein, putative, unclassified
LOC_Os01g47180OsAffx.11498.1.S1_x_at11/111+27295063..272957643'-5' exonuclease family protein, expressed
LOC_Os01g47190OsAffx.11499.1.S1_at10/111+27298488..27301030phosphoglycerate/bisphosphoglycerate mutase family protein, putative, expressed
LOC_Os01g47200Os.27264.1.A1_at9/111+27302464..27304899transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g47210NANA1+27308167..27308427hypothetical protein
LOC_Os01g47220NANA1+27311754..27313103retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g47230NANA1+27313704..27315510retrotransposon protein, putative, unclassified
LOC_Os01g47240NANA1+27318809..27322045transposon protein, putative, unclassified
LOC_Os01g47250NANA1+27322692..27328847retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27264.1.A1_at--961--3011Chr01:27304567..27304591 (25 bp)
AATGCTTCAGCCTCCATGGCATTCT
LOC_Os01g47200
Os.27264.1.A1_at--803--851Chr01:27304582..27304606 (25 bp)
ATGGCATTCTTAGCTTTCGTTGCTC
LOC_Os01g47200
Os.27264.1.A1_at--867--6671Chr01:27304600..27304624 (25 bp)
GTTGCTCTTGGTTTTAGCTCCATAA
LOC_Os01g47200
Os.27264.1.A1_at--1074--1591Chr01:27304615..27304639 (25 bp)
AGCTCCATAATCTCAGCGTATCATG
LOC_Os01g47200
Os.27264.1.A1_at--626--3511Chr01:27304636..27304660 (25 bp)
CATGTCTTCAGCTCGGTTTTTTAAA
LOC_Os01g47200
Os.27264.1.A1_at--88--2851Chr01:27304683..27304707 (25 bp)
AAGTACTATGTGCTAGTCTGCTAGA
LOC_Os01g47200
Os.27264.1.A1_at--534--6891Chr01:27304709..27304733 (25 bp)
GTATCTTGGTCAAGCCAACCTTGAT
LOC_Os01g47200
Os.27264.1.A1_at--91--1751Chr01:27304726..27304750 (25 bp)
ACCTTGATTGTTGCTTCTTGTTTGT
LOC_Os01g47200
Os.27264.1.A1_at--286--7531Chr01:27304757..27304781 (25 bp)
GTGGCAACGATATTGGACTCCGAAA
LOC_Os01g47200
Os.27264.1.A1_at--383--86334Chr10:15635636..15635890 (25 bp)
TGGTGGATCTCCACTTCTGCCTGAG
NONE
Os.27264.1.A1_at--914--18924Chr08:11093987..11094011 (25 bp)
ACGTCGGCTCAGCAACGTGCATGTT
NONE
Target Sequence 
AATGCTTCAGCCTCCATGGCATTCTTAGCTTTCGTTGCTCTTGGTTTTAGCTCCATAATCTCAGCGTATCATGTCTTCAG
CTCGGTTTTTTAAACCCATTGTACATTACTTGTTGTAAGTACTATGTGCTAGTCTGCTAGATGTATCTTGGTCAAGCCAA
CCTTGATTGTTGCTTCTTGTTTGTAGAATTGTGGCAACGATATTGGACTCCGAAATGGGAATACANGGTGATCTTTTTAA
GAGCGTGTAATGGCAGTTGGGCCTTGGGGACCAATCGGTTCTGTAATAAAAANNNNNNNNNNNNNNNCNNNNNNGNNNGN
GNCTTNNNNTGNNATNNNNNGNNNTCTCGGTATGTGGAAAGATCGCCAGCTAGGAAGAAACGCGAGACACGGGCGATGTA
TACAGGTTCGGGCCGCTGAGAAGCGTAATACCCTACTCCTGTGTTTTGGTGGATCTCCACTTCTGCCTGAGGCGGGCACG
TCGTGGGAAGGTGGCTGTGTGCTGACGACATGAGCAGTGTCAGACCGGTCACAAATCGGTCATTCTTGTCCACCACACGT
CGGCTCAGCAACGTGCATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27264.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis