Browse Element(s) Details


OsAffx.11498.1.S1_x_at

Description gb:NM_192484.1
DB_XREF= gi:34912051
GEN=P0445H04.27
TID=OsAffx.11498.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0445H04.27 (P0445H04.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4718011/113'-5' exonuclease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47140Os.45173.1.S1_x_at1/111+27271646..27273998retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g47150NANA1+27274266..27278693retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g47160Os.31312.5.S1_x_at6/111+27282848..27285874retrotransposon protein, putative, unclassified
LOC_Os01g47160Os.31312.2.S1_x_at1/111+27282848..27285874retrotransposon protein, putative, unclassified
LOC_Os01g47170NANA1+27286777..27292940retrotransposon protein, putative, unclassified
LOC_Os01g47180OsAffx.11498.1.S1_x_at11/111+27295063..272957643'-5' exonuclease family protein, expressed
LOC_Os01g47190OsAffx.11499.1.S1_at10/111+27298488..27301030phosphoglycerate/bisphosphoglycerate mutase family protein, putative, expressed
LOC_Os01g47200Os.27264.1.A1_at9/111+27302464..27304899transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g47210NANA1+27308167..27308427hypothetical protein
LOC_Os01g47220NANA1+27311754..27313103retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g47230NANA1+27313704..27315510retrotransposon protein, putative, unclassified
LOC_Os01g47240NANA1+27318809..27322045transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
GO:0005515molecular_functionprotein binding
GO:0008408molecular_function3'-5' exonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11498.1.S1_x_at--215--1731Chr01:27295623..27295647 (25 bp)
ACCGACACGTACGTCACCGAGGTGG
LOC_Os01g47180
OsAffx.11498.1.S1_x_at--703--1891Chr01:27295613..27295637 (25 bp)
ACGTCACCGAGGTGGCCTTCGGCGA
LOC_Os01g47180
OsAffx.11498.1.S1_x_at--698--1573Chr05:933284..933308 (25 bp)
AGCTCTGCGTCGACCGCAGGTGCCT
NONE
OsAffx.11498.1.S1_x_at--325--9153Chr05:933279..933303 (25 bp)
TGCGTCGACCGCAGGTGCCTCATCT
NONE
OsAffx.11498.1.S1_x_at--1128--1971Chr01:27295340..27295364 (25 bp)
ACTGCTTCGTCGGTGTCGGCGTGGA
LOC_Os01g47180
OsAffx.11498.1.S1_x_at--50--3992Chr02:8241490..8241514 (25 bp)
CGTGGACAAGGACGCCGAGCGGCTG
NONE
OsAffx.11498.1.S1_x_at--571--4231Chr01:27295172..27295196 (25 bp)
CCGACCTCGTCAAGCCGCAGAGGGT
LOC_Os01g47180
OsAffx.11498.1.S1_x_at--1017--9391Chr01:27295166..27295190 (25 bp)
TCGTCAAGCCGCAGAGGGTGACCAT
LOC_Os01g47180
OsAffx.11498.1.S1_x_at--446--1731Chr01:27295146..27295170 (25 bp)
ACCATGAGCCGCTGGGACGCCTCCT
LOC_Os01g47180
OsAffx.11498.1.S1_x_at--216--3671Chr01:27295119..27295143 (25 bp)
CTCTCCAACGAGCAAATCCGGTACG
LOC_Os01g47180
OsAffx.11498.1.S1_x_at--337--1491Chr01:27295109..27295133 (25 bp)
AGCAAATCCGGTACGCCTGCATCGA
LOC_Os01g47180
Target Sequence 
ACCGACACGTACGTCACCGAGGTGGCCTTCGGCGACGCCGTGATCACCACCACCGTGACGTCCTCCGGCGCCGCCGTGGA
GGGGTGGCTCCGGGAGGTCCGCGCCGCGTACGGCCCCGGGCTCATCGTGGGGCTCGACGTCGAGTGGCGCCCCAGCTACG
GCCCTGCGCAGAACCCCGTCGCGCTGCTGCAGCTCTGCGTCGACCGCAGGTGCCTCATCTTCCAGCTCCTCTACGCCGAC
TACGTCCCAGGCTCCCTCCGCCGCTTCCTCGCCGGCGCCGCGGACTGCTTCGTCGGTGTCGGCGTGGACAAGGACGCCGA
GCGGCTGAGCGACGACCACGGCCTCACCGTGGCGAACACCGCCGACCTTCGCCCCCTCGCGGCGCAGAGGCTGGGCCGCC
CGGAGCTCAGCCAGGCCGGCCTGCAGGCCGTGGTGCGCGCCGTCATGGGCGCCGACCTCGTCAAGCCGCAGAGGGTGACC
ATGAGCCGCTGGGACGCCTCCTGCCTCTCCAACGAGCAAATCCGGTACGCCTGCATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11498.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis