Browse Element(s) Details


Os.27265.1.S1_s_at

Description gb:AK107439.1
DB_XREF= gi:32992648
TID=Os.27265.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27265 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-128-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-128-B03, full insert sequence.
FL= gb:AK107439.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6371011/11cell division control protein CDC6b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63670OsAffx.23904.1.S1_at10/111+37260474..37261328hypothetical protein
LOC_Os01g63680OsAffx.23905.1.S1_at11/111+37263833..37266210Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g63690Os.6321.1.S1_at11/111+37269538..37271426Nematode-resistance protein, putative, expressed
LOC_Os01g63710Os.27265.1.S1_s_at11/111+37278922..37283576cell division control protein CDC6b, putative, expressed
LOC_Os01g63720OsAffx.11714.1.S1_at11/111+37287609..37288015hypothetical protein
LOC_Os01g63730OsAffx.2396.1.S1_at11/111+37291178..37291577hypothetical protein
LOC_Os01g63740OsAffx.25936.1.S1_s_at6/111+37302994..37306723transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63740OsAffx.25936.7.S1_s_at5/111+37302994..37306723transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63740OsAffx.25936.1.S1_at3/111+37302994..37306723transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63740OsAffx.25936.5.S1_x_at2/111+37302994..37306723transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63740OsAffx.25936.2.S1_x_at1/111+37302994..37306723transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63750OsAffx.18122.1.S1_x_at2/111+37307938..37308616hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0006260biological_processDNA replication
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27265.1.S1_s_at--78--1151Chr01:37282667..37282691 (25 bp)
AGTCCCAGCAGTTGGAATGCTTGAA
LOC_Os01g63710
Os.27265.1.S1_s_at--236--2111Chr01:37282699..37282723 (25 bp)
ACATGTGCATGGTTTTGAGTGATCA
LOC_Os01g63710
Os.27265.1.S1_s_at--339--6571Chr01:37282810..37282834 (25 bp)
GATTCATGAAGCTTGGGCAATCCAA
LOC_Os01g63710
Os.27265.1.S1_s_at--520--4831Chr01:37282844..37282868 (25 bp)
GCTCAGGAGAGTGATGCTTCAAATT
LOC_Os01g63710
Os.27265.1.S1_s_at--264--10751Chr01:37282867..37282891 (25 bp)
TTGACAGTTCAGATATCACTTTTGC
LOC_Os01g63710
Os.27265.1.S1_s_at--710--1211Chr01:37283034..37283058 (25 bp)
AGTTAGTCACTCAATTCAGCAACGA
LOC_Os01g63710
Os.27265.1.S1_s_at--117--3091Chr01:37283113..37283133 (21 bp)
AATAATGCCCAAAAGTTCAGGATTT
LOC_Os01g63710
Os.27265.1.S1_s_at--1138--1791Chr01:37283321..37283345 (25 bp)
ACCCCGTCCTCAATGTTTATCAATA
LOC_Os01g63710
Os.27265.1.S1_s_at--1031--5531Chr01:37283361..37283385 (25 bp)
GAAACCCTTTGCTGAGAAAACTGTA
LOC_Os01g63710
Os.27265.1.S1_s_at--637--9111Chr01:37283370..37283394 (25 bp)
TGCTGAGAAAACTGTACATGCGGGA
LOC_Os01g63710
Os.27265.1.S1_s_at--217--5571Chr01:37283427..37283451 (25 bp)
GAAAGATTCCTAACTGTATTTGTAA
LOC_Os01g63710
Target Sequence 
AGTCCCAGCAGTTGGAATGCTTGAATTTTCAAACATGTGCATGGTTTTGAGTGATCAGGNNNNNNNNNNNNNNNGATTCA
TGAAGCTTGGGCAATCCAAAGAAGATAAGCTCAGGAGAGTGATGCTTCAAATTGACAGTTCAGATATCACTTTTGCATTT
AAGGGTAACCGGTTNTTTCAGAAATGTTTGGAGCAACAAAAATTTTAGTTAGTCACTCAATTCAGCAACGACGTNTATAC
ACAGTTTGCATTGTATNTTATACCAAGTGCCAGCAAATNAAAAGCAATAATGCCCAAAAGTTCAGGATTTTGCATTNTAT
TGGATCAAACCAACGTAAATTTTGACCCCGTCCTCAATGTTTATCAATATTTATGATTTATGGNGAAACCCTTTGCTGAG
AAAACTGTACATGCGGGANGAGTTATGATTGTTTTTNTTACAGTTNTTNTGAAAGATTCCTAACTGTATTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27265.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis