Browse Element(s) Details


OsAffx.23904.1.S1_at

Description tigr:9629.m06296
TID=OsAffx.23904.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6367010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63630OsAffx.22896.1.S1_x_at2/111+37228366..37236123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63630Os.47130.4.A1_x_at2/111+37228366..37236123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63630OsAffx.940.1.S1_x_at1/111+37228366..37236123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63640Os.28943.1.S1_x_at4/111+37237251..37240295retrotransposon protein, putative, unclassified
LOC_Os01g63650NANA1+37241109..37243837retrotransposon protein, putative, unclassified
LOC_Os01g63660OsAffx.22848.4.S1_x_at3/111+37244775..37247763retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63660OsAffx.22848.4.S1_at2/111+37244775..37247763retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63670OsAffx.23904.1.S1_at10/111+37260474..37261328hypothetical protein
LOC_Os01g63680OsAffx.23905.1.S1_at11/111+37263833..37266210Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g63690Os.6321.1.S1_at11/111+37269538..37271426Nematode-resistance protein, putative, expressed
LOC_Os01g63710Os.27265.1.S1_s_at11/111+37278922..37283576cell division control protein CDC6b, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23904.1.S1_at--66--10771Chr01:37261273..37261297 (25 bp)
TTGAGCGCAGCCACATGAGGATGGA
LOC_Os01g63670
OsAffx.23904.1.S1_at--320--4591Chr01:37261269..37261293 (25 bp)
GCGCAGCCACATGAGGATGGATGAT
LOC_Os01g63670
OsAffx.23904.1.S1_at--161--8572Chr08:18366588..18366608 (21 bp)
TGGATGATGAGGACATTACTCCTTT
NONE
OsAffx.23904.1.S1_at--469--711Chr01:37261249..37261273 (25 bp)
ATGATGAGGACATTACTCCTTTGGA
LOC_Os01g63670
OsAffx.23904.1.S1_at--201--9651Chr01:37261236..37261260 (25 bp)
TACTCCTTTGGATACGCAAAATACT
LOC_Os01g63670
OsAffx.23904.1.S1_at--970--7931Chr01:37261227..37261251 (25 bp)
GGATACGCAAAATACTTCTCATGTT
LOC_Os01g63670
OsAffx.23904.1.S1_at--95--2271Chr01:37261218..37261242 (25 bp)
AAATACTTCTCATGTTTTCGTACAA
LOC_Os01g63670
OsAffx.23904.1.S1_at--299--4011NONE
CGTACAAGCAACAAGGTCAATCGGT
NONE
OsAffx.23904.1.S1_at--357--2711Chr01:37260526..37260549 (24 bp)
AAGCAACAAGGTCAATCGGTTTCGA
LOC_Os01g63670
OsAffx.23904.1.S1_at--90--2911Chr01:37260519..37260543 (25 bp)
AAGGTCAATCGGTTTCGACATGGTT
LOC_Os01g63670
OsAffx.23904.1.S1_at--1022--2914Chr01:14416203..14416222 (20 bp)
AATCGGTTTCGACATGGTTGATAAC
NONE
Target Sequence 
TTGAGCGCAGCCACATGAGGATGGATGATGAGGACATTACTCCTTTGGATACGCAAAATACTTCTCATGTTTTCGTACAA
GCAACAAGGTCAATCGGTTTCGACATGGTTGATAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis