Browse Element(s) Details


Os.6321.1.S1_at

Description gb:AK099776.1
DB_XREF= gi:32984985
TID=Os.6321.1
CNT=39
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6321 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative nematode resistance-like protein (OJ1402_H07.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095E24, full insert sequence.
FL= gb:AK099776.1 gb:AY224522.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6369011/11Nematode-resistance protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63660OsAffx.22848.4.S1_x_at3/111+37244775..37247763retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63660OsAffx.22848.4.S1_at2/111+37244775..37247763retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63670OsAffx.23904.1.S1_at10/111+37260474..37261328hypothetical protein
LOC_Os01g63680OsAffx.23905.1.S1_at11/111+37263833..37266210Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g63690Os.6321.1.S1_at11/111+37269538..37271426Nematode-resistance protein, putative, expressed
LOC_Os01g63710Os.27265.1.S1_s_at11/111+37278922..37283576cell division control protein CDC6b, putative, expressed
LOC_Os01g63720OsAffx.11714.1.S1_at11/111+37287609..37288015hypothetical protein
LOC_Os01g63730OsAffx.2396.1.S1_at11/111+37291178..37291577hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6321.1.S1_at--721--6151Chr01:37270098..37270122 (25 bp)
GAGGTTCTTCTTCGCGTACCGGCAG
LOC_Os01g63690
Os.6321.1.S1_at--516--791Chr01:37270058..37270082 (25 bp)
ATGGGCACCGCGGAGTCGTCGACCA
LOC_Os01g63690
Os.6321.1.S1_at--760--4011Chr01:37269940..37269964 (25 bp)
CGTTCTTGGCCGACTACTGGGTACG
LOC_Os01g63690
Os.6321.1.S1_at--41--8451Chr01:37269910..37269934 (25 bp)
TGGCCGGTGACGGTGACTCTGCTTC
LOC_Os01g63690
Os.6321.1.S1_at--639--7371Chr01:37269898..37269922 (25 bp)
GTGACTCTGCTTCGTCCAGGCGAAG
LOC_Os01g63690
Os.6321.1.S1_at--720--7971Chr01:37269848..37269872 (25 bp)
GGATGCCGCCGGACCCTGAATTTTG
LOC_Os01g63690
Os.6321.1.S1_at--1126--8091Chr01:37269838..37269862 (25 bp)
GGACCCTGAATTTTGCAGTCTTTCA
LOC_Os01g63690
Os.6321.1.S1_at--637--9451Chr01:37269777..37269801 (25 bp)
TCTGTAGGGTAGTGGTCGCGTTCAT
LOC_Os01g63690
Os.6321.1.S1_at--534--4131Chr01:37269761..37269785 (25 bp)
CGCGTTCATCTTTCAGTTCGAGTAA
LOC_Os01g63690
Os.6321.1.S1_at--427--831Chr01:37269612..37269636 (25 bp)
ATGGATTATGTGTCCGATATTGATA
LOC_Os01g63690
Os.6321.1.S1_at--325--6271Chr01:37269581..37269605 (25 bp)
GATGTACTACGAATTGTTTCAAAGG
LOC_Os01g63690
Target Sequence 
GAGGTTCTTCTTCGCGTACCGGCAGCTCGTGGCGGCGGTGATGGGCACCGCGGAGTCGTCGACCAACCGCGCGCTGTTCT
CGCCGGCGGAGGAGATGGACCCCCTGGCGCAGATGTTCCTCGAGCCGCCCTACTTCCCCAGCCTCGACGCCGCCAAGACG
TTCTTGGCCGACTACTGGGTACGGCGGATGGCCGGTGACGGTGACTCTGCTTCGTCCAGGCGAAGCTGAGCGGCGGAAAT
AGTGGCGGATGGATGCCGCCGGACCCTGAATTTTGCAGTCTTTCAAGGTTGATGATACATTTAATACATTTATGATTTAT
TTCTGTAGGGTAGTGGTCGCGTTCATCTTTCAGTTCGAGTAAATGTTTTATTGGGAGACATTTTGGTTTAGATTTGATTA
CTAGATGGTAACGGGAAAATGATCTAGGATCATATATTTCAATTAGAGTACTGATGATGTATATAATGCTCTGTAAATAT
GTTTCAATGGATTATGTGTCCGATATTGATAATGTTTGATGTACTACGAATTGTTTCAAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis