Browse Element(s) Details


Os.27281.1.S1_at

Description gb:AK064965.1
DB_XREF= gi:32974983
TID=Os.27281.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27281 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001B01, full insert sequence.
FL= gb:AK064965.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0262011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02560OsAffx.25840.1.S1_at11/114+946556..947133expressed protein
LOC_Os04g02570OsAffx.25841.1.S1_at11/114+954235..954648hypothetical protein
LOC_Os04g02580Os.52079.1.S1_at11/114+955074..956771expressed protein
LOC_Os04g02590OsAffx.13623.1.S1_at11/114+958618..959001hypothetical protein
LOC_Os04g02600OsAffx.15220.2.S1_s_at5/114+961396..966134retrotransposon protein, putative, LINE subclass
LOC_Os04g02600OsAffx.15220.1.S1_s_at4/114+961396..966134retrotransposon protein, putative, LINE subclass
LOC_Os04g02600Os.13877.1.S1_at1/114+961396..966134retrotransposon protein, putative, LINE subclass
LOC_Os04g02610NANA4+967480..967680hypothetical protein
LOC_Os04g02620Os.27281.1.S1_at11/114+971635..974161oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g02630OsAffx.13625.1.S1_at11/114+977818..979615hypothetical protein
LOC_Os04g02640Os.50130.1.S1_at11/114+984396..986229Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os04g02650OsAffx.25842.1.S1_at11/114+986975..989473expressed protein
LOC_Os04g02660OsAffx.16092.2.A1_at10/114+991080..992897hypothetical protein
LOC_Os04g02670NANA4+995453..997163hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042335biological_processcuticle biosynthesis
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27281.1.S1_at--15--6591Chr04:973585..973609 (25 bp)
GATTCGTCTCGCCAAGTAGCCTCTA
LOC_Os04g02620
Os.27281.1.S1_at--690--4391Chr04:973595..973619 (25 bp)
GCCAAGTAGCCTCTATCTGTGTAAT
LOC_Os04g02620
Os.27281.1.S1_at--473--9531Chr04:973669..973693 (25 bp)
TCTAATGTGACAGTGACGAGCTAAA
LOC_Os04g02620
Os.27281.1.S1_at--933--3271Chr04:973710..973734 (25 bp)
CAAACAAGCCCTTAACTGGCAGAAA
LOC_Os04g02620
Os.27281.1.S1_at--719--3051Chr04:973751..973775 (25 bp)
AATCTCTTGAACAATCCACCAGTCA
LOC_Os04g02620
Os.27281.1.S1_at--704--1051Chr04:973866..973890 (25 bp)
AGTGTGTTACTCCACCAACTAAGGT
LOC_Os04g02620
Os.27281.1.S1_at--760--7871Chr04:973888..973912 (25 bp)
GGTTTAAATAATGATCCCTGATGTA
LOC_Os04g02620
Os.27281.1.S1_at--647--10239Chr11:24113743..24113811 (24 bp)
TATTGATATGTACTTCCTCTGTTTC
NONE
Os.27281.1.S1_at--70--7611Chr04:974108..974132 (25 bp)
GGGAGAACGTGTTATCCTTCCAAGT
LOC_Os04g02620
Os.27281.1.S1_at--3--10151Chr04:974120..974144 (25 bp)
TATCCTTCCAAGTTATCCTTCCAAT
LOC_Os04g02620
Os.27281.1.S1_at--550--10291Chr04:974132..974156 (25 bp)
TTATCCTTCCAATACTACTTGTCCT
LOC_Os04g02620
Target Sequence 
GATTCGTCTCGCCAAGTAGCCTCTATCTGTGTAATTAGTTTTGTAAGTAGTCTGTGTTTAATACTTCAAATTAATGTTTA
AATATCTAATGTGACAGTGACGAGCTAAAGTTTAATCACTAGATCCAAACAAGCCCTTAACTGGCAGAAAATTTTTTTTT
ACCTCAAATCTCTTGAACAATCCACCAGTCAATCAAGCAATATATATGCATTTTTATTTTCTTTTTGCATATATAGTTTG
CATATATGTTAATGGTTTAGTGTGGCGATGAAGTTTGTGAGTGTGTTACTCCACCAACTAAGGTTTAAATAATGATCCCT
GATGTATATATAAAATATGGTTCTGTACATGTGTCCTTTTAATTATTGATATGTACTTCCTCTGTTTCACAATGTAAGTC
ATTCTAGTATTTCCAACATTTATATTAATGTTAATGAATCTAGATAGATATATATATGTCTAGATTTATTAACATTAATA
TAAATGTGGAAAATGATAGAATGACTTACATTGTGAAACGGGGGAGAACGTGTTATCCTTCCAAGTTATCCTTCCAATAC
TACTTGTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27281.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis