Browse Element(s) Details


Os.27320.1.S1_at

Description gb:AK066482.1
DB_XREF= gi:32976500
TID=Os.27320.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27320 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013069O21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013069O21, full insert sequence.
FL= gb:AK066482.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0588011/11exocyst subunit EXO70 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05850Os.11817.1.S1_a_at11/1111+2726047..2732547cyclin family protein, putative, expressed
LOC_Os11g05860Os.9519.1.S1_at11/1111+2734343..2735367Harpin-induced protein 1 containing protein, expressed
LOC_Os11g05870Os.53155.1.S1_s_at11/1111+2742264..2745674Harpin-induced protein 1 containing protein, expressed
LOC_Os11g05880Os.27320.1.S1_at11/1111+2755667..2760853exocyst subunit EXO70 family protein, putative, expressed
LOC_Os11g05890NANA11+2764620..2767925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05900NANA11+2770311..2772910transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05910Os.47463.1.S1_x_at6/1111+2773017..2774011transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05910Os.14491.2.S1_x_at5/1111+2773017..2774011transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920OsAffx.10637.3.S1_s_at10/1111+2775341..2780748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920OsAffx.10637.4.S1_s_at9/1111+2775341..2780748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920OsAffx.32056.1.S1_x_at8/1111+2775341..2780748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920OsAffx.10637.1.S1_s_at5/1111+2775341..2780748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920OsAffx.32056.1.S1_at3/1111+2775341..2780748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05930Os.12795.1.S1_at11/1111+2784900..2789632CCT motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27320.1.S1_at--230--5211Chr11:2756597..2756621 (25 bp)
GAATTGCGTGAATCCTTGAGGCTTG
LOC_Os11g05880
Os.27320.1.S1_at--137--8891Chr11:2756565..2756589 (25 bp)
TGAGGTTCTGTTACCAGCCTATCGG
LOC_Os11g05880
Os.27320.1.S1_at--472--3371Chr11:2756551..2756575 (25 bp)
CAGCCTATCGGTCGTTTGTCAAACG
LOC_Os11g05880
Os.27320.1.S1_at--24--1511Chr11:2755999..2756023 (25 bp)
AGCACGAGCTCTACCAGTAAGTTGA
LOC_Os11g05880
Os.27320.1.S1_at--887--6631Chr11:2755973..2755997 (25 bp)
GTTGTACATCAGCACGACTTGCAAA
LOC_Os11g05880
Os.27320.1.S1_at--467--5131Chr11:2755953..2755977 (25 bp)
GCAAAGATTTCTTTCCCGGACAAGC
LOC_Os11g05880
Os.27320.1.S1_at--1065--10211Chr11:2755902..2755926 (25 bp)
TATTGTCATACCGATGCGCTACCGA
LOC_Os11g05880
Os.27320.1.S1_at--551--1171Chr11:2755861..2755885 (25 bp)
AGTAACTTCAGTTTGCCTCAGTGCT
LOC_Os11g05880
Os.27320.1.S1_at--822--7351Chr11:2755815..2755839 (25 bp)
GTGAAGAGGCGTGTATCTCTCTCTG
LOC_Os11g05880
Os.27320.1.S1_at--1095--8791Chr11:2755792..2755816 (25 bp)
TGTTCTCACAACACACCGATGTTAT
LOC_Os11g05880
Os.27320.1.S1_at--654--10371Chr11:2755756..2755780 (25 bp)
TTTTTTCCCGATCACAGAGTTGTAC
LOC_Os11g05880
Target Sequence 
GAATTGCGTGAATCCTTGAGGCTTGCGGTAGCTGAGGTTCTGTTACCAGCCTATCGGTCGTTTGTCAAACGTTTCGGTAA
CCTTGTTGAGAATGGCAAGAACCCGCACAAATACGTGAGGTACAGCCCAGAGATGGTGGAGCAGCTGTTGGGGGAATTCT
TCGAAGGACAGCAATGGGGGGAGCAGAAGCGCTGAGCAGTGAACACTGTCCATGAGCGACAGCACGAGCTCTACCAGTAA
GTTGAAGTTGTACATCAGCACGACTTGCAAAGATTTCTTTCCCGGACAAGCAACTAACGATTCTTTGCGTTATAACGTAT
TGTCATACCGATGCGCTACCGATGTATATATATATAATAGTAACTTCAGTTTGCCTCAGTGCTGAATGCCAAACACGGCA
ACAGGTGAAGAGGCGTGTATCTCTCTCTGTTCTCACAACACACCGATGTTATTATTGTTTTGTTTTTTTCCCGATCACAG
AGTTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis