Browse Element(s) Details


Os.9519.1.S1_at

Description gb:AK070326.1
DB_XREF= gi:32980350
TID=Os.9519.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.9519 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052I16, full insert sequence.
FL= gb:AK104479.1 gb:AK104466.1 gb:AK104372.1 gb:AK104217.1 gb:AK119781.1 gb:AK070326.1 gb:AK106091.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0586011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05840OsAffx.30834.1.S1_at11/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.30834.1.S1_x_at11/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840Os.46785.2.S1_x_at3/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.30226.2.S1_x_at2/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.5278.1.S1_at1/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.10573.1.S1_at1/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.442.1.S1_x_at1/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05850Os.11817.1.S1_a_at11/1111+2726047..2732547cyclin family protein, putative, expressed
LOC_Os11g05860Os.9519.1.S1_at11/1111+2734343..2735367Harpin-induced protein 1 containing protein, expressed
LOC_Os11g05870Os.53155.1.S1_s_at11/1111+2742264..2745674Harpin-induced protein 1 containing protein, expressed
LOC_Os11g05880Os.27320.1.S1_at11/1111+2755667..2760853exocyst subunit EXO70 family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9519.1.S1_at--597--1891Chr11:2734734..2734758 (25 bp)
ACGTCGCGGCGGAGTACCTCATCCT
LOC_Os11g05860
Os.9519.1.S1_at--639--9171Chr11:2734555..2734579 (25 bp)
TGCCGCGTCGAGGTCTAGCTGTCTC
LOC_Os11g05860
Os.9519.1.S1_at--112--6151Chr11:2734546..2734570 (25 bp)
GAGGTCTAGCTGTCTCGTCTTCTCC
LOC_Os11g05860
Os.9519.1.S1_at--975--4091Chr11:2734513..2734537 (25 bp)
CGACGGCGAGGTGTGCATAAATGTC
LOC_Os11g05860
Os.9519.1.S1_at--31--4611Chr11:2734508..2734532 (25 bp)
GCGAGGTGTGCATAAATGTCGGTAA
LOC_Os11g05860
Os.9519.1.S1_at--66--771Chr11:2734493..2734517 (25 bp)
ATGTCGGTAATTACTGTAGCGTTGA
LOC_Os11g05860
Os.9519.1.S1_at--434--9831Chr11:2734451..2734475 (25 bp)
TAAATTTAGCGTGGGTTAATCAAAG
LOC_Os11g05860
Os.9519.1.S1_at--1086--6871Chr11:2734427..2734451 (25 bp)
GTATATTTTGTGTTTAAGCGTTGTT
LOC_Os11g05860
Os.9519.1.S1_at--282--6751Chr11:2734416..2734440 (25 bp)
GTTTAAGCGTTGTTAAGCTTTCAGT
LOC_Os11g05860
Os.9519.1.S1_at--447--9791Chr11:2734403..2734427 (25 bp)
TAAGCTTTCAGTTCCACGTTTAATT
LOC_Os11g05860
Os.9519.1.S1_at--367--10511Chr11:2734397..2734421 (25 bp)
TTCAGTTCCACGTTTAATTGTTAAT
LOC_Os11g05860
Target Sequence 
ACGTCGCGGCGGAGTACCTCATCCTCCAGGTCAAGATCGACGGCCGCGTCCGGTGGAAGGTCGGCAGCTGGATCTCCGGC
CACTACCACCTCTTCGTCACCTGCCCGGCCTTCTTCATCGCCTCCGGCGGCAACGGCTACCCCGGCGCCAATGGCCTCAA
GTTCCAGACCGCCACCTACTGCCGCGTCGAGGTCTAGCTGTCTCGTCTTCTCCGGCTCCGGCGACGGCGAGGTGTGCATA
AATGTCGGTAATTACTGTAGCGTTGAGGTGGGGGGTATAGAGGTAAATTTAGCGTGGGTTAATCAAAGTATATTTTGTGT
TTAAGCGTTGTTAAGCTTTCAGTTCCACGTTTAATTGTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9519.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis