Browse Element(s) Details


Os.27324.1.S1_a_at

Description gb:AK073768.1
DB_XREF= gi:32983791
TID=Os.27324.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27324 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 31147 putative U2 snRNP auxiliary factor mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068H24, full insert sequence.
FL= gb:AK073768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4182011/11U2 snRNP auxilliary factor, large subunit, splicing factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41820Os.27324.1.S1_a_at11/1111+24647368..24652097U2 snRNP auxilliary factor, large subunit, splicing factor family protein, expressed
LOC_Os11g41830Os.50046.1.S1_at11/1111+24652445..24654168expressed protein
LOC_Os11g41830OsAffx.19315.1.S1_x_at1/1111+24652445..24654168expressed protein
LOC_Os11g41840OsAffx.19315.1.S1_x_at1/1111+24658671..24660289Sugar transporter family protein
LOC_Os11g41840Os.54779.1.S1_s_at1/1111+24658671..24660289Sugar transporter family protein
LOC_Os11g41850Os.54779.1.S1_s_at11/1111+24664429..24666390Sugar transporter family protein, expressed
LOC_Os11g41860Os.16002.1.S1_at11/1111+24670365..24672205F-box domain containing protein, expressed
LOC_Os11g41860OsAffx.19314.1.S1_s_at11/1111+24670365..24672205F-box domain containing protein, expressed
LOC_Os11g41870Os.22949.1.S1_at11/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870OsAffx.19315.1.S1_x_at11/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.11062.1.S1_at9/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.11829.1.S1_at3/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.54779.1.S1_s_at1/1111+24673662..24678827Sugar transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27324.1.S1_a_at--190--5571Chr11:24648454..24648478 (25 bp)
GAAAGCATGCTCCTGCATGTACAAC
LOC_Os11g41820
Os.27324.1.S1_a_at--685--5031Chr11:24648324..24648347 (24 bp)
GCAGAAACTCATGTTCCAAGTTGGA
LOC_Os11g41820
Os.27324.1.S1_a_at--328--7631Chr11:24648297..24648321 (25 bp)
GGGAGCACTGCCTACAAAGGTGGTA
LOC_Os11g41820
Os.27324.1.S1_a_at--1139--3251Chr11:24648283..24648307 (25 bp)
CAAAGGTGGTATGCCTGACCCAAGT
LOC_Os11g41820
Os.27324.1.S1_a_at--788--5331Chr11:24647627..24647651 (25 bp)
GAAGTTTGCCAACAACCAGGTGGTG
LOC_Os11g41820
Os.27324.1.S1_a_at--515--8631Chr11:24647607..24647631 (25 bp)
TGGTGGCTGTCTTCTACCCTGAGGA
LOC_Os11g41820
Os.27324.1.S1_a_at--1140--9951Chr11:24647593..24647617 (25 bp)
TACCCTGAGGACAAGTTCGCTGAAG
LOC_Os11g41820
Os.27324.1.S1_a_at--413--5751Chr11:24647560..24647584 (25 bp)
GACGGTTGAACATCGAAGTCGCCCT
LOC_Os11g41820
Os.27324.1.S1_a_at--650--5331Chr11:24647546..24647570 (25 bp)
GAAGTCGCCCTCTTATTGTTTCTAA
LOC_Os11g41820
Os.27324.1.S1_a_at--481--31Chr11:24647420..24647444 (25 bp)
ATTGGTGCAGAATCATGTGTACTTT
LOC_Os11g41820
Os.27324.1.S1_a_at--371--3691Chr11:24647399..24647423 (25 bp)
CTTTGGGTATGTTCTTATGGTTCTG
LOC_Os11g41820
Target Sequence 
GAAAGCATGCTCCTGCATGTACAACAACAGGCGCAAATGCAGAAACTCATGTTCCAAGTTGGAGGGGGAGCACTGCCTAC
AAAGGTGGTATGCCTGACCCAAGTGGTTTCACCAGATGAACTGAGGGATGATGAGGAGTATGAGGACATCGTGCAAGACA
TGAGGGAAGAAGGGTGCAGATACGGTAACCTGGTGAAAGTTNTGANCCCGCGACCTGATCCCAGCGGTGCNCCTGTTGCT
GGANTTGGNAGGGTGTTTTTGGAATTTGCAGATGTAGAGAGCTCGACCAAGGCGAAGAATGGGATGCACGGGAGGAAGTT
TGCCAACAACCAGGTGGTGGCTGTCTTCTACCCTGAGGACAAGTTCGCTGAAGGGCAATACGACGGTTGAACATCGAAGT
CGCCCTCTTATTGTTTCTAACGCCTATAAGGCGGAATCTATTTACGTTTACCTTAGTTTTGCAATTTTTACATCTAGTTT
TTTTTTTCTGTGTTAGTTGAAATTTTATTAGTAGTCCAGAGATTGGTGCAGAATCATGTGTACTTTGGGTATGTTCTTAT
GGTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27324.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis