Browse Element(s) Details


Os.11062.1.S1_at

Description gb:BI799785
DB_XREF= gi:15851509
DB_XREF=H140G04
CLONE=H140G04
TID=Os.11062.1
CNT=18
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.11062 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_564277.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g418709/11Sugar transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41820Os.27324.1.S1_a_at11/1111+24647368..24652097U2 snRNP auxilliary factor, large subunit, splicing factor family protein, expressed
LOC_Os11g41830Os.50046.1.S1_at11/1111+24652445..24654168expressed protein
LOC_Os11g41830OsAffx.19315.1.S1_x_at1/1111+24652445..24654168expressed protein
LOC_Os11g41840OsAffx.19315.1.S1_x_at1/1111+24658671..24660289Sugar transporter family protein
LOC_Os11g41840Os.54779.1.S1_s_at1/1111+24658671..24660289Sugar transporter family protein
LOC_Os11g41850Os.54779.1.S1_s_at11/1111+24664429..24666390Sugar transporter family protein, expressed
LOC_Os11g41860Os.16002.1.S1_at11/1111+24670365..24672205F-box domain containing protein, expressed
LOC_Os11g41860OsAffx.19314.1.S1_s_at11/1111+24670365..24672205F-box domain containing protein, expressed
LOC_Os11g41870Os.22949.1.S1_at11/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870OsAffx.19315.1.S1_x_at11/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.11062.1.S1_at9/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.11829.1.S1_at3/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.54779.1.S1_s_at1/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41880OsAffx.7379.1.S1_at10/1111+24679945..24682122Potyvirus VPg interacting protein, putative
LOC_Os11g41890Os.9816.1.S2_a_at11/1111+24691659..24695993RNA-binding protein, putative, expressed
LOC_Os11g41890Os.9816.1.S1_a_at11/1111+24691659..24695993RNA-binding protein, putative, expressed
LOC_Os11g41900Os.11801.1.S1_at11/1111+24698478..247046791-acyl-sn-glycerol-3-phosphate acyltransferase PLS1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0005354molecular_functiongalactose transporter activity
GO:0005355molecular_functionglucose transporter activity
GO:0005365molecular_functionmyo-inositol transporter activity
GO:0005403molecular_functionhydrogen:sugar symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
GO:0015148molecular_functionD-xylose transporter activity
GO:0015168molecular_functionglycerol transporter activity
GO:0015575molecular_functionmannitol transporter activity
GO:0015591molecular_functionD-ribose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11062.1.S1_at--1117--1811NONE
ACGCGACCCGCGGAGATGACTACTT
NONE
Os.11062.1.S1_at--1107--7811NONE
GGTCATTGGATCATCTTTGTTTCAG
NONE
Os.11062.1.S1_at--403--10251Chr11:24676677..24676701 (25 bp)
TTTGTTTCAGATAATCAGGACAGCA
LOC_Os11g41870
Os.11062.1.S1_at--913--3691Chr11:24676651..24676675 (25 bp)
CTAGCGGCGGGATGGCCTAAAAACA
LOC_Os11g41870
Os.11062.1.S1_at--518--6231Chr11:24676641..24676665 (25 bp)
GATGGCCTAAAAACAGAGCTGATTC
LOC_Os11g41870
Os.11062.1.S1_at--479--6051Chr11:24676614..24676638 (25 bp)
GAGATTTGTGATACATTGCATCCAA
LOC_Os11g41870
Os.11062.1.S1_at--912--9051Chr11:24676598..24676622 (25 bp)
TGCATCCAATGCAAGTGGCAGCGGC
LOC_Os11g41870
Os.11062.1.S1_at--1031--5051Chr11:24676581..24676605 (25 bp)
GCAGCGGCAGCTAAAATGTTTGGTG
LOC_Os11g41870
Os.11062.1.S1_at--791--10811Chr11:24676556..24676580 (25 bp)
TTGTCAGTGTTTTGTATGCATTTAC
LOC_Os11g41870
Os.11062.1.S1_at--716--4951Chr11:24676539..24676563 (25 bp)
GCATTTACATTTCTGAAGCATCGAG
LOC_Os11g41870
Os.11062.1.S1_at--148--5211Chr11:24676496..24676520 (25 bp)
GAATTACCTGTCTTACAATGTTGAA
LOC_Os11g41870
Target Sequence 
ACGCGACCCGCGGAGATGACTACTTCAAGGCGCCTTGCTGACAGGAAGACTGCAAAGTTCCAGAAGAATATCACCAAGAG
GGGTTCAGTGCCTGAAACTACTGTGAAGAAGGGGAACGACTATCCAGTTGGACCTCTTGTGCTTGGATTCTTCATATTTG
TGGTCATTGGATCATCTTTGTTTCAGATAATCAGGACAGCAACTAGCGGCGGGATGGCCTAAAAACAGAGCTGATTCAAG
AGATTTGTGATACATTGCATCCAATGCAAGTGGCAGCGGCAGCTAAAATGTTTGGTGTTGTCAGTGTTTTGTATGCATTT
ACATTTCTGAAGCATCGAGTTGAAGTACAATGTAACAGAATTACCTGTCTTACAATGTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis