Browse Element(s) Details


OsAffx.7379.1.S1_at

Description tigr:9639.m03852
TID=OsAffx.7379.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4188010/11Potyvirus VPg interacting protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41840OsAffx.19315.1.S1_x_at1/1111+24658671..24660289Sugar transporter family protein
LOC_Os11g41840Os.54779.1.S1_s_at1/1111+24658671..24660289Sugar transporter family protein
LOC_Os11g41850Os.54779.1.S1_s_at11/1111+24664429..24666390Sugar transporter family protein, expressed
LOC_Os11g41860Os.16002.1.S1_at11/1111+24670365..24672205F-box domain containing protein, expressed
LOC_Os11g41860OsAffx.19314.1.S1_s_at11/1111+24670365..24672205F-box domain containing protein, expressed
LOC_Os11g41870Os.22949.1.S1_at11/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870OsAffx.19315.1.S1_x_at11/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.11062.1.S1_at9/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.11829.1.S1_at3/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.54779.1.S1_s_at1/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41880OsAffx.7379.1.S1_at10/1111+24679945..24682122Potyvirus VPg interacting protein, putative
LOC_Os11g41890Os.9816.1.S2_a_at11/1111+24691659..24695993RNA-binding protein, putative, expressed
LOC_Os11g41890Os.9816.1.S1_a_at11/1111+24691659..24695993RNA-binding protein, putative, expressed
LOC_Os11g41900Os.11801.1.S1_at11/1111+24698478..247046791-acyl-sn-glycerol-3-phosphate acyltransferase PLS1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7379.1.S1_at--1127--491Chr11:24681029..24681053 (25 bp)
ATCGATGGGTCCTGAAGTTCTGCTT
LOC_Os11g41880
OsAffx.7379.1.S1_at--693--9071NONE
TGCTTCAGGCGCTCCAAGAGATTGA
NONE
OsAffx.7379.1.S1_at--691--6291Chr11:24680466..24680490 (25 bp)
GATGATGCTCCAGAGATCACTGAAA
LOC_Os11g41880
OsAffx.7379.1.S1_at--112--9051Chr11:24680429..24680453 (25 bp)
TGCAGCAGAACACTGATCCCCATGA
LOC_Os11g41880
OsAffx.7379.1.S1_at--799--8851Chr11:24680416..24680440 (25 bp)
TGATCCCCATGAAACCTGCAACAAT
LOC_Os11g41880
OsAffx.7379.1.S1_at--5--3091Chr11:24680394..24680418 (25 bp)
AATCAACTCTCTGAATATGTCCAAG
LOC_Os11g41880
OsAffx.7379.1.S1_at--973--2731Chr11:24680352..24680376 (25 bp)
AAGAAGGTTCGCCTCTCTGTCGATG
LOC_Os11g41880
OsAffx.7379.1.S1_at--597--3891Chr11:24680187..24680211 (25 bp)
CTGTGCAAGATACTCGACGCGCTGA
LOC_Os11g41880
OsAffx.7379.1.S1_at--26--7271Chr11:24680119..24680143 (25 bp)
GTCCAAGGTGCATGAGCTGCTGCGC
LOC_Os11g41880
OsAffx.7379.1.S1_at--808--5971Chr11:24680015..24680039 (25 bp)
GAGACAGAAATGACGGCGACGACCC
LOC_Os11g41880
OsAffx.7379.1.S1_at--343--1871Chr11:24679997..24680021 (25 bp)
ACGACCCGCGGCAGATGATGATGCT
LOC_Os11g41880
Target Sequence 
ATCGATGGGTCCTGAAGTTCTGCTTCAGGCGCTCCAAGAGATTGAGCTAGATGATGCTCCAGAGATCACTGAAAACGAAA
AACAGGTGCAGCAGAACACTGATCCCCATGAAACCTGCAACAATCAACTCTCTGAATATGTCCAAGAAACTGCAATGACG
AACAAGAAGGTTCGCCTCTCTGTCGATGCCATCACCGACGGCGAGGTGGAGAAGGCCAAGGAGGCCGAGCAGCAGCTGCA
GCCCATGGCGGCGGAGCAGGAGGAGGTCCCGCCACCGCCGGCGAGCAGCAGCGGCGGCGTGGCGGCGCCGACGACGCAGA
ACGCGATGCTGTGCAAGATACTCGACGCGCTGAGCGGCATGCCGTCGCCGCCGTCGTCCGAGTCCGCCGCCGCGGTGTCC
AAGGTGCATGAGCTGCTGCGCGAGGCCCTGAGCATGCCGCGCAGCTCCGGCCGCGCCACCGCCGCCGCCGTCGACGACGA
CGACGTGGCGCAGAACGGGAGAGACAGAAATGACGGCGACGACCCGCGGCAGATGATGATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis