Browse Element(s) Details


Os.27351.1.S1_x_at

Description gb:CB669548
DB_XREF= gi:29673273
DB_XREF=OSJNEe02C02.r
CLONE=OSJNEe02C02
TID=Os.27351.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.27351 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g304808/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30450NANA6+17592384..17592983hypothetical protein
LOC_Os06g30460Os.22279.1.S1_at11/116+17596802..176086742-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os06g30460Os.22279.3.S1_x_at9/116+17596802..176086742-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os06g30470OsAffx.4972.1.S1_at8/116+17608800..17611799expressed protein
LOC_Os06g30480Os.27351.1.S1_x_at8/116+17616360..17617969expressed protein
LOC_Os06g30480OsAffx.24778.1.S1_s_at1/116+17616360..17617969expressed protein
LOC_Os06g30490OsAffx.27883.1.S1_at11/116+17625945..17626533hypothetical protein
LOC_Os06g30500OsAffx.27884.1.S1_at11/116+17629607..17631315Cytochrome P450 family protein, expressed
LOC_Os06g30510OsAffx.448.1.S1_x_at1/116+17638394..17645636retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27351.1.S1_x_at--980--1911Chr06:17616875..17616899 (25 bp)
ACGGGCACGGCAGGTACGCGTACGC
LOC_Os06g30480
Os.27351.1.S1_x_at--865--6031Chr06:17616828..17616852 (25 bp)
GAGATGCTGGGCTCGGCGGGCACGC
LOC_Os06g30480
Os.27351.1.S1_x_at--483--7291NONE
GTGCGCGAGGGCATTTACAGCCTCG
NONE
Os.27351.1.S1_x_at--19--1051NONE
AGGGCATTTACAGCCTCGCCACGGA
NONE
Os.27351.1.S1_x_at--1063--8271NONE
GGCATTTACAGCCTCGCCACGGACG
NONE
Os.27351.1.S1_x_at--907--6171Chr06:17616690..17616714 (25 bp)
GAGGAGAATCCCAACGCCTGTGCCA
LOC_Os06g30480
Os.27351.1.S1_x_at--1136--5591Chr06:17616653..17616677 (25 bp)
GAAATTCACAATTGTCAGAGAATAA
LOC_Os06g30480
Os.27351.1.S1_x_at--63--10051Chr06:17616581..17616605 (25 bp)
TAGAGGAATATGATGCTTTCAGCGT
LOC_Os06g30480
Os.27351.1.S1_x_at--768--6331Chr06:17616570..17616594 (25 bp)
GATGCTTTCAGCGTTTTAATTTGTA
LOC_Os06g30480
Os.27351.1.S1_x_at--1007--4871Chr06:17616567..17616591 (25 bp)
GCTTTCAGCGTTTTAATTTGTAGAT
LOC_Os06g30480
Os.27351.1.S1_x_at--731--8731Chr06:17616549..17616573 (25 bp)
TGTAGATAAGGTTGGTGACAGTAGT
LOC_Os06g30480
Target Sequence 
ACGGGCACGGCAGGTACGCGTACGCGCCGTCGCCGCTGGCGCGGTGGGAGATGCTGGGCTCGGCGGGCACGCCGCGGCGG
CACGAGTACTTTTCCGGCGAGTNCCGGTGGTGCTACCCGNCNCCGGTGCGCGAGGGCATTTACAGCCTCGCCACGGACGC
CAACCGCCTCACCACCATNTTCAGCGAGGAGAATCCCAACGCCTGTGCCATCGTNTGACCAAGAAATTCACAATTGTCAG
AGAATAATCAAAAGTTCTTNTTAGGGGACAAACTATATATATATAACTAGTGATTAGAGGAATATGATGCTTTCAGCGTT
TTAATTTGTAGATAAGGTTGGTGACAGTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27351.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis