Browse Element(s) Details


OsAffx.27884.1.S1_at

Description tigr:9634.m02934
TID=OsAffx.27884.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3050011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30460Os.22279.1.S1_at11/116+17596802..176086742-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os06g30460Os.22279.3.S1_x_at9/116+17596802..176086742-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os06g30470OsAffx.4972.1.S1_at8/116+17608800..17611799expressed protein
LOC_Os06g30480Os.27351.1.S1_x_at8/116+17616360..17617969expressed protein
LOC_Os06g30480OsAffx.24778.1.S1_s_at1/116+17616360..17617969expressed protein
LOC_Os06g30490OsAffx.27883.1.S1_at11/116+17625945..17626533hypothetical protein
LOC_Os06g30500OsAffx.27884.1.S1_at11/116+17629607..17631315Cytochrome P450 family protein, expressed
LOC_Os06g30510OsAffx.448.1.S1_x_at1/116+17638394..17645636retrotransposon protein, putative, unclassified
LOC_Os06g30520Os.39476.1.S1_at5/116+17652992..17660445transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30520OsAffx.8455.1.S1_at4/116+17652992..17660445transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30520OsAffx.14839.1.S1_at1/116+17652992..17660445transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27884.1.S1_at--656--4111Chr06:17630176..17630200 (25 bp)
CGCAAGCCGAGGTTAGGGAAGCCTA
LOC_Os06g30500
OsAffx.27884.1.S1_at--959--8431Chr06:17630059..17630083 (25 bp)
GGCCATTGGCTCTACCAAGGGAGTG
LOC_Os06g30500
OsAffx.27884.1.S1_at--171--331Chr06:17630018..17630042 (25 bp)
ATACTCGGCTATGACATACCGAAAG
LOC_Os06g30500
OsAffx.27884.1.S1_at--986--2911Chr06:17629996..17630020 (25 bp)
AAGGAGCTACGGTACTCGTGAATGT
LOC_Os06g30500
OsAffx.27884.1.S1_at--831--7831Chr06:17629986..17630010 (25 bp)
GGTACTCGTGAATGTATGGGCTATT
LOC_Os06g30500
OsAffx.27884.1.S1_at--524--7591Chr06:17629969..17629993 (25 bp)
GGGCTATTTGCACAGATAACGAGTT
LOC_Os06g30500
OsAffx.27884.1.S1_at--362--4351Chr06:17629919..17629943 (25 bp)
CCAGAGAGGTTCGAGGGTAGTACAA
LOC_Os06g30500
OsAffx.27884.1.S1_at--108--5391Chr06:17629846..17629870 (25 bp)
GAAGAATATGCCCTGGGATGCAATT
LOC_Os06g30500
OsAffx.27884.1.S1_at--31--8331Chr06:17629800..17629824 (25 bp)
GGCTCTCGCAAATCTTTTGTTTCAT
LOC_Os06g30500
OsAffx.27884.1.S1_at--295--171Chr06:17629777..17629801 (25 bp)
ATTTTGATTGGACTCTCCCTGAGGG
LOC_Os06g30500
OsAffx.27884.1.S1_at--37--4271Chr06:17629760..17629784 (25 bp)
CCTGAGGGCACTCTCCATAGTGATT
LOC_Os06g30500
Target Sequence 
CGCAAGCCGAGGTTAGGGAAGCCTACAAGGACAAAATGGAGGTAACCGAGGAAGGCCTAACTAACCTAACCTATCTACAA
TGTATCATCAAGGAGACCCTGCGGCTGCACACTCCCGGGCCATTGGCTCTACCAAGGGAGTGCCAGGAGCAATGCCAAAT
ACTCGGCTATGACATACCGAAAGGAGCTACGGTACTCGTGAATGTATGGGCTATTTGCACAGATAACGAGTTTTGGGATG
AGTCGGAGAAGTTTATGCCAGAGAGGTTCGAGGGTAGTACAATAGAACACAAAGGTAACAACTTCGAGTTCATACCATTC
GGTGCTGGGCGAAGAATATGCCCTGGGATGCAATTTGGGATTGCTAATATTGAGCTGGCTCTCGCAAATCTTTTGTTTCA
TTTTGATTGGACTCTCCCTGAGGGCACTCTCCATAGTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis