Browse Element(s) Details


Os.27412.1.S1_at

Description gb:AK111694.1
DB_XREF= gi:37988357
TID=Os.27412.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27412 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004O18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004O18, full insert sequence.
FL= gb:AK111694.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4237011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42340OsAffx.12453.2.S1_x_at11/112+25457845..25458289hypothetical protein
LOC_Os02g42350Os.4158.1.S1_at11/112+25459865..25463715Nitrilase 4, putative, expressed
LOC_Os02g42360OsAffx.12454.1.S1_at11/112+25475019..25476086expressed protein
LOC_Os02g42370Os.27412.1.S1_at11/112+25482215..25485863Leucine Rich Repeat family protein, expressed
LOC_Os02g42380Os.51204.1.S1_at11/112+25491456..25492560TCP family transcription factor containing protein, expressed
LOC_Os02g42390OsAffx.12455.1.S1_at11/112+25498778..25500043hypothetical protein
LOC_Os02g42400OsAffx.24687.1.S1_at9/112+25502534..25503056BolA like protein, putative
LOC_Os02g42400Os.37276.1.S1_at2/112+25502534..25503056BolA like protein, putative
LOC_Os02g42406Os.25250.1.S1_at11/112+25505013..25507718DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g42412Os.51832.1.S1_at11/112+25508640..25509778expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27412.1.S1_at--301--8211Chr02:25485279..25485303 (25 bp)
GGAAGGCGGCCTACAGATAACACAT
LOC_Os02g42370
Os.27412.1.S1_at--868--991Chr02:25485311..25485335 (25 bp)
AGGATTTAGCCTTCGCAAGTGCGTT
LOC_Os02g42370
Os.27412.1.S1_at--857--5171Chr02:25485325..25485349 (25 bp)
GCAAGTGCGTTGAGATGGCCCTGAA
LOC_Os02g42370
Os.27412.1.S1_at--146--5891Chr02:25485355..25485379 (25 bp)
GAGCGATGGACATTCTCGATGTAGA
LOC_Os02g42370
Os.27412.1.S1_at--1108--2471Chr02:25485386..25485410 (25 bp)
AACAGAGCTTGAAAACGCGCCGCCT
LOC_Os02g42370
Os.27412.1.S1_at--26--2511Chr02:25485413..25485437 (25 bp)
AACATCCATGGATGGTCCGTCAGAA
LOC_Os02g42370
Os.27412.1.S1_at--839--2291Chr02:25485436..25485460 (25 bp)
AAAGGGTGAACTCCCTGATTTCGCT
LOC_Os02g42370
Os.27412.1.S1_at--885--6511Chr02:25485452..25485476 (25 bp)
GATTTCGCTACTTAAACTCGGGCTG
LOC_Os02g42370
Os.27412.1.S1_at--963--7591Chr02:25485550..25485574 (25 bp)
GGGCACTCGCTTAAGAAAGCTTTTT
LOC_Os02g42370
Os.27412.1.S1_at--749--91Chr02:25485648..25485672 (25 bp)
ATTCCTGATGTATGTGCGATTCTCT
LOC_Os02g42370
Os.27412.1.S1_at--35--2811Chr02:25485770..25485794 (25 bp)
AAGATGTTGCCGCTGATACTCTCTT
LOC_Os02g42370
Target Sequence 
GGAAGGCGGCCTACAGATAACACATGTGAGCAAGGATTTAGCCTTCGCAAGTGCGTTGAGATGGCCCTGAANAATCGAGC
GATGGACATTCTCGATGTAGAGCTGGTAACAGAGCTTGAAAACGCGCCGCCTGCAACATCCATGGATGGTCCGTCAGAAA
GGGTGAACTCCCTGATTTCGCTACTTAAACTCGGGCTGCTCTGCTCTGGGGAAATGCCATTGAGTAGAATGTCAACCAAA
GATATCATCAAGGAGCTGCTTGTAATCAAAAGGGCACTCGCTTAAGAAAGCTTTTTTTTAAGAGGAAGGTCACAACTTAA
GAAGGCTTTTGAGAAGCAAAACATGCCAAATTATGTGCTCTTTTTTATTATTCCTGATGTATGTGCGATTCTCTTTAATT
TCTAAGACAAACTCATGAATGCATGGGTTTCAAAGAACAAAAGAATTGTACTGGTGTAATATGCGATANAGNTTTTNCTG
GATCNACGGTGAAAAGATGTTGCCGCTGATACTCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27412.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis