Browse Element(s) Details


OsAffx.12454.1.S1_at

Description tigr:9630.m04055
TID=OsAffx.12454.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4236011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42320Os.10566.1.S1_at11/112+25448359..25452739Proteasome subunit alpha type 2, putative, expressed
LOC_Os02g42330Os.17898.1.S1_at11/112+25453616..25456858Nitrilase 4, putative, expressed
LOC_Os02g42340OsAffx.12453.2.S1_x_at11/112+25457845..25458289hypothetical protein
LOC_Os02g42350Os.4158.1.S1_at11/112+25459865..25463715Nitrilase 4, putative, expressed
LOC_Os02g42360OsAffx.12454.1.S1_at11/112+25475019..25476086expressed protein
LOC_Os02g42370Os.27412.1.S1_at11/112+25482215..25485863Leucine Rich Repeat family protein, expressed
LOC_Os02g42380Os.51204.1.S1_at11/112+25491456..25492560TCP family transcription factor containing protein, expressed
LOC_Os02g42390OsAffx.12455.1.S1_at11/112+25498778..25500043hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12454.1.S1_at--921--3411Chr02:25475417..25475441 (25 bp)
CAGAACCAGCCACGCAACGGAAGAG
LOC_Os02g42360
OsAffx.12454.1.S1_at--868--6511Chr02:25475345..25475369 (25 bp)
GATTTGGTGACGGAGCTTGGGCTAC
LOC_Os02g42360
OsAffx.12454.1.S1_at--26--1551Chr02:25475332..25475356 (25 bp)
AGCTTGGGCTACGGCAGGTGAATTT
LOC_Os02g42360
OsAffx.12454.1.S1_at--751--6671Chr02:25475236..25475260 (25 bp)
GTTGCGATGGTGTGCGGTCTACGGA
LOC_Os02g42360
OsAffx.12454.1.S1_at--351--871Chr02:25475183..25475207 (25 bp)
ATGGCGGCGACAAAGCTCGAGTTGC
LOC_Os02g42360
OsAffx.12454.1.S1_at--1107--2191Chr02:25475174..25475198 (25 bp)
ACAAAGCTCGAGTTGCAACGGTGCA
LOC_Os02g42360
OsAffx.12454.1.S1_at--1018--6051Chr02:25475165..25475189 (25 bp)
GAGTTGCAACGGTGCATCAGCAACA
LOC_Os02g42360
OsAffx.12454.1.S1_at--896--391Chr02:25475150..25475174 (25 bp)
ATCAGCAACAGATCGACTCGGCCTG
LOC_Os02g42360
OsAffx.12454.1.S1_at--350--2491Chr02:25475144..25475168 (25 bp)
AACAGATCGACTCGGCCTGCGGGAT
LOC_Os02g42360
OsAffx.12454.1.S1_at--329--2211Chr02:25475077..25475101 (25 bp)
ACAACGGTGTGTCGACGGCAGATCT
LOC_Os02g42360
OsAffx.12454.1.S1_at--291--5751Chr02:25475064..25475088 (25 bp)
GACGGCAGATCTGACGGCGCCGATT
LOC_Os02g42360
Target Sequence 
CAGAACCAGCCACGCAACGGAAGAGTGGCGGCGACGGGGGCCTCGGTGGCGAAGCTCGGGCTGCGAGGGGCAGATTTGGT
GACGGAGCTTGGGCTACGGCAGGTGAATTTGGCGGGGAGGGGCGGCGGAGGCTTGCGACGAGAAGGAGCAGCGACGGCAG
GACCCGGGCGGCGGAGTTCTGGTTGCGATGGTGTGCGGTCTACGGATCTGGTGGCGGCGGTCGGTGACAGCGGCATGGCG
GCGACAAAGCTCGAGTTGCAACGGTGCATCAGCAACAGATCGACTCGGCCTGCGGGATGTGGATCCGATGGCGCCGAGGC
ATGCGGGGGACAGGTTGGCGACAACGGTGTGTCGACGGCAGATCTGACGGCGCCGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12454.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis