Browse Element(s) Details


Os.10566.1.S1_at

Description gb:AK059769.1
DB_XREF= gi:32969787
TID=Os.10566.1
CNT=33
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.10566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H03, full insert sequence.
FL= gb:AK068583.1 gb:AK059769.1 gb:AK106210.1 gb:AK072855.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4232011/11Proteasome subunit alpha type 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42290Os.4948.1.S1_x_at11/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42290OsAffx.24686.1.S1_at10/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42290Os.4948.2.S1_at1/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42300Os.54078.1.S1_at11/112+25429184..25433567expressed protein
LOC_Os02g42300Os.54078.1.S2_at11/112+25429184..25433567expressed protein
LOC_Os02g42310Os.8499.1.S1_a_at11/112+25437006..25444238Serine carboxypeptidase II precursor, putative, expressed
LOC_Os02g42314Os.7368.1.S1_at11/112+25444418..25448205Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os02g42320Os.10566.1.S1_at11/112+25448359..25452739Proteasome subunit alpha type 2, putative, expressed
LOC_Os02g42330Os.17898.1.S1_at11/112+25453616..25456858Nitrilase 4, putative, expressed
LOC_Os02g42340OsAffx.12453.2.S1_x_at11/112+25457845..25458289hypothetical protein
LOC_Os02g42350Os.4158.1.S1_at11/112+25459865..25463715Nitrilase 4, putative, expressed
LOC_Os02g42360OsAffx.12454.1.S1_at11/112+25475019..25476086expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0005819cellular_componentspindle
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0009524cellular_componentphragmoplast
GO:0019773cellular_componentproteasome core complex, alpha-subunit complex (sensu Eukaryota)
GO:0004175molecular_functionendopeptidase activity
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10566.1.S1_at--725--2391Chr02:25450815..25450839 (25 bp)
AAACTATCCCTGTTACTCAGCTTGT
LOC_Os02g42320
Os.10566.1.S1_at--312--8791Chr02:25450855..25450879 (25 bp)
TGTTATGCAGGAGTTCACACAGTCT
LOC_Os02g42320
Os.10566.1.S1_at--816--411Chr02:25451521..25451545 (25 bp)
ATCATTATTGATTGCCGGGTACGAT
LOC_Os02g42320
Os.10566.1.S1_at--251--7851Chr02:25451538..25451562 (25 bp)
GGTACGATGACAATGGCCCACAGCT
LOC_Os02g42320
Os.10566.1.S1_at--1162--1591Chr02:25451559..25451829 (25 bp)
AGCTGTATCAGGTTGATCCCTCAGG
LOC_Os02g42320
Os.10566.1.S1_at--1042--8851Chr02:25452077..25452101 (25 bp)
TGATGATGCCATCCATACTGCCATT
LOC_Os02g42320
Os.10566.1.S1_at--719--571Chr02:25452087..25452111 (25 bp)
ATCCATACTGCCATTTTGACTCTGA
LOC_Os02g42320
Os.10566.1.S1_at--819--7691Chr02:25452200..25452224 (25 bp)
GGGTCAAATCTCAGCCAACAATATT
LOC_Os02g42320
Os.10566.1.S1_at--888--3171Chr02:25452227..25452251 (25 bp)
AATTGGAGTTATTCGATCTGACCGT
LOC_Os02g42320
Os.10566.1.S1_at--879--9771Chr02:25452459..25452483 (25 bp)
TAAGTGACACTCTTGAGCCGTAGTC
LOC_Os02g42320
Os.10566.1.S1_at--935--3611Chr02:25452493..25452517 (25 bp)
CTTGTCTCTTACCATTTGTCACTTA
LOC_Os02g42320
Target Sequence 
AAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGGAGTTCACACAGTCTGGTGGTGTAAGACCA
TTTGGAGTATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGGTTGATCCCTCAGGATCATACTT
CTCCTGGAAAGCATCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGATACACAGAAGACATGG
AGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGATATGAGGGTCAAATCTCAGCCAACAATATTGAA
ATTGGAGTTATTCGATCTGACCGTGAATTCAAAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTA
AATTGTCTGTTGACATTTGATAGTTTACTGTTCTAAGTGACACTCTTGAGCCGTAGTCATGAGGCTTCTTGTCTCTTACC
ATTTGTCACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis