Browse Element(s) Details


Os.54078.1.S2_at

Description gb:AK106596.1
DB_XREF= gi:32991805
TID=Os.54078.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54078 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-A06, full insert sequence.
FL= gb:AK101737.1 gb:AK106596.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4230011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42240Os.7065.1.S1_at11/112+25404559..25405031expressed protein
LOC_Os02g42250OsAffx.24684.1.S1_at11/112+25405640..254065995-azacytidine resistance protein, putative
LOC_Os02g42270OsAffx.12452.1.S1_at11/112+25408842..254097895-azacytidine resistance protein, putative
LOC_Os02g42280OsAffx.24685.1.S1_at11/112+25417824..25420552UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g42290Os.4948.1.S1_x_at11/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42290OsAffx.24686.1.S1_at10/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42290Os.4948.2.S1_at1/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42300Os.54078.1.S1_at11/112+25429184..25433567expressed protein
LOC_Os02g42300Os.54078.1.S2_at11/112+25429184..25433567expressed protein
LOC_Os02g42310Os.8499.1.S1_a_at11/112+25437006..25444238Serine carboxypeptidase II precursor, putative, expressed
LOC_Os02g42314Os.7368.1.S1_at11/112+25444418..25448205Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os02g42320Os.10566.1.S1_at11/112+25448359..25452739Proteasome subunit alpha type 2, putative, expressed
LOC_Os02g42330Os.17898.1.S1_at11/112+25453616..25456858Nitrilase 4, putative, expressed
LOC_Os02g42340OsAffx.12453.2.S1_x_at11/112+25457845..25458289hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54078.1.S2_at--903--5491Chr02:25432984..25433008 (25 bp)
GAACACACTGTTCTTTGCTAAGATG
LOC_Os02g42300
Os.54078.1.S2_at--800--7091Chr02:25433026..25433050 (25 bp)
GTCAAATGGTTACTCCGGGAAGCCT
LOC_Os02g42300
Os.54078.1.S2_at--669--5691Chr02:25433077..25433101 (25 bp)
GACTATCCACCAAGTTAGCTGGCCA
LOC_Os02g42300
Os.54078.1.S2_at--742--6311Chr02:25433122..25433146 (25 bp)
GATTAAATCTTGTGTTGTTCCCCGG
LOC_Os02g42300
Os.54078.1.S2_at--122--7911Chr02:25433155..25433179 (25 bp)
GGTTGCAATTGTGCCTTCGCTTTCA
LOC_Os02g42300
Os.54078.1.S2_at--507--4891Chr02:25433173..25433197 (25 bp)
GCTTTCACATCGAGCATCACTTGTT
LOC_Os02g42300
Os.54078.1.S2_at--544--2831Chr02:25433296..25433320 (25 bp)
AAGTATCTATCCTCCTGCGAGTTAA
LOC_Os02g42300
Os.54078.1.S2_at--411--9111Chr02:25433384..25433408 (25 bp)
TGCTGTCAGTTTGTCGCAACGTGTT
LOC_Os02g42300
Os.54078.1.S2_at--477--5151Chr02:25433425..25433449 (25 bp)
GCAACAGCACAACGAGACACATTAT
LOC_Os02g42300
Os.54078.1.S2_at--195--10051Chr02:25433475..25433499 (25 bp)
TAGTTTCGGTCGGAGTTTGTCTCCA
LOC_Os02g42300
Os.54078.1.S2_at--310--8731Chr02:25433492..25433516 (25 bp)
TGTCTCCACCTGATCAAAGCTTGAT
LOC_Os02g42300
Target Sequence 
GAACACACTGTTCTTTGCTAAGATGATAAGAAATGTACTTTGGTCAAATGGTTACTCCGGGAAGCCTTAAGATTTTGATT
TTGCTCGGAGGAAGACTATCCACCAAGTTAGCTGGCCAATGTATTTTATGATCTCCAGGATTAAATCTTGTGTTGTTCCC
CGGTATTTTGGGGTTGCAATTGTGCCTTCGCTTTCACATCGAGCATCACTTGTTCAGATTGGTGGCAACATGCTGAATAG
TGAATATTCATTTTCTGTTGGAGCTGAATATTCAATTGATGAAGAGCATCAAATCAAGTTTATCATTACAGGAAGTATCT
ATCCTCCTGCGAGTTAATTAAGTTGCCAACTCATTTGGGAATGGAACAAAAAACCAAATTATTGAGAGAACAAGCAAGCT
TGCTGTCAGTTTGTCGCAACGTGTTGACATAAAATAGGTTAGCAACAGCACAACGAGACACATTATTGTACTAAAGCTAG
TGTTTGGGGATTAGTTTCGGTCGGAGTTTGTCTCCACCTGATCAAAGCTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54078.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis