Browse Element(s) Details


OsAffx.12452.1.S1_at

Description tigr:9630.m04045
TID=OsAffx.12452.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4227011/115-azacytidine resistance protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42200Os.17969.1.S1_at11/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42200Os.51995.1.S1_x_at10/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42200Os.18487.1.S1_at1/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42210Os.51712.1.S1_at11/112+25387106..25388704membrane-associated salt-inducible protein, putative, expressed
LOC_Os02g42220Os.6489.1.S1_at11/112+25394018..25398463transposon protein, putative, unclassified, expressed
LOC_Os02g42220OsAffx.12451.1.S1_x_at11/112+25394018..25398463transposon protein, putative, unclassified, expressed
LOC_Os02g42230Os.15035.1.S1_at10/112+25398544..25402499OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os02g42240Os.7065.1.S1_at11/112+25404559..25405031expressed protein
LOC_Os02g42250OsAffx.24684.1.S1_at11/112+25405640..254065995-azacytidine resistance protein, putative
LOC_Os02g42270OsAffx.12452.1.S1_at11/112+25408842..254097895-azacytidine resistance protein, putative
LOC_Os02g42280OsAffx.24685.1.S1_at11/112+25417824..25420552UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g42290Os.4948.1.S1_x_at11/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42290OsAffx.24686.1.S1_at10/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42290Os.4948.2.S1_at1/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42300Os.54078.1.S1_at11/112+25429184..25433567expressed protein
LOC_Os02g42300Os.54078.1.S2_at11/112+25429184..25433567expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12452.1.S1_at--628--4291Chr02:25409406..25409430 (25 bp)
CCTCATGTACAACGCCTTCGAGATG
LOC_Os02g42270
OsAffx.12452.1.S1_at--264--9851Chr02:25409399..25409423 (25 bp)
TACAACGCCTTCGAGATGGTCGTGG
LOC_Os02g42270
OsAffx.12452.1.S1_at--909--5811Chr02:25409250..25409274 (25 bp)
GACCCTGAAATACGCCTACATCGGC
LOC_Os02g42270
OsAffx.12452.1.S1_at--547--8231Chr02:25409198..25409222 (25 bp)
GGCAAGCTCTTCTTCCGTTCCGAGG
LOC_Os02g42270
OsAffx.12452.1.S1_at--190--2731Chr02:25409132..25409156 (25 bp)
AAGAACGGGAACAGCGTCACCTCGG
LOC_Os02g42270
OsAffx.12452.1.S1_at--848--5611Chr02:25409042..25409066 (25 bp)
GACAACGTGACCAGCGAGGAGCTCC
LOC_Os02g42270
OsAffx.12452.1.S1_at--741--8291Chr02:25408952..25408976 (25 bp)
GGCTTCGCCTACGAGGCGTCGACGA
LOC_Os02g42270
OsAffx.12452.1.S1_at--765--4011Chr02:25408936..25408960 (25 bp)
CGTCGACGACGATGGGCAGAGACAC
LOC_Os02g42270
OsAffx.12452.1.S1_at--1133--6251Chr02:25408926..25408950 (25 bp)
GATGGGCAGAGACACGCCCTTCAGC
LOC_Os02g42270
OsAffx.12452.1.S1_at--146--4311Chr02:25408909..25408933 (25 bp)
CCTTCAGCCTCGAGAGCCGGAAGAA
LOC_Os02g42270
OsAffx.12452.1.S1_at--780--4471Chr02:25408894..25408918 (25 bp)
GCCGGAAGAAGCAAGGGACGATTTT
LOC_Os02g42270
Target Sequence 
CCTCATGTACAACGCCTTCGAGATGGTCGTGGCCACGACGCCCGGCGGCGCGGGGGGCATCTGCCCCTACGCGCTGCTGG
GGTGGGCGTACGAGCAGGCGGTATCGGCGCGGACGCAGGGGGCATCCACGGCGGTGATCCTGTCGCTCGCCGGCGCGACC
CTGAAATACGCCTACATCGGCGACAGCGCGTTCGCGGTGTTCCGCGACGGCAAGCTCTTCTTCCGTTCCGAGGCCCAGGT
CCACTCCTTCAACTACCCGTTCCAGCTCAGCGTCAAGAACGGGAACAGCGTCACCTCGGCGGCGCGCGGCGGCGTCGAGG
TGAAGGAGGGCGACGTCGTGGTGGCCGGGACGGACGGGCTGTTCGACAACGTGACCAGCGAGGAGCTCCAGCGGATCGTC
GCGATGGGCAGGGCGCTGGGGCTGTCGCCCAAGCAGACGGCGGACGTCGTCGCCGGCTTCGCCTACGAGGCGTCGACGAC
GATGGGCAGAGACACGCCCTTCAGCCTCGAGAGCCGGAAGAAGCAAGGGACGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12452.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis