Browse Element(s) Details


OsAffx.12451.1.S1_x_at

Description tigr:9630.m04040
TID=OsAffx.12451.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=OPT oligopeptide transporter protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4222011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42190OsAffx.21096.2.S1_x_at1/112+25368823..25372024Protein kinase domain containing protein
LOC_Os02g42200Os.17969.1.S1_at11/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42200Os.51995.1.S1_x_at10/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42200Os.18487.1.S1_at1/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42210Os.51712.1.S1_at11/112+25387106..25388704membrane-associated salt-inducible protein, putative, expressed
LOC_Os02g42220Os.6489.1.S1_at11/112+25394018..25398463transposon protein, putative, unclassified, expressed
LOC_Os02g42220OsAffx.12451.1.S1_x_at11/112+25394018..25398463transposon protein, putative, unclassified, expressed
LOC_Os02g42230Os.15035.1.S1_at10/112+25398544..25402499OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os02g42240Os.7065.1.S1_at11/112+25404559..25405031expressed protein
LOC_Os02g42250OsAffx.24684.1.S1_at11/112+25405640..254065995-azacytidine resistance protein, putative
LOC_Os02g42270OsAffx.12452.1.S1_at11/112+25408842..254097895-azacytidine resistance protein, putative
LOC_Os02g42280OsAffx.24685.1.S1_at11/112+25417824..25420552UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12451.1.S1_x_at--957--1951Chr02:25397492..25397516 (25 bp)
ACTGGATACTTGACTCTGGCATCAC
LOC_Os02g42220
OsAffx.12451.1.S1_x_at--1071--1771Chr02:25397515..25397539 (25 bp)
ACCGAGGTCCATGTTTATCAGCCAG
LOC_Os02g42220
OsAffx.12451.1.S1_x_at--540--7991Chr02:25397553..25397577 (25 bp)
GGATGGGCTGTGTCATAGCTCCCTG
LOC_Os02g42220
OsAffx.12451.1.S1_x_at--920--3111Chr02:25397609..25397633 (25 bp)
AATATTGGCACAAGCGGCACCGAGT
LOC_Os02g42220
OsAffx.12451.1.S1_x_at--1139--251Chr02:25397644..25397668 (25 bp)
ATATGCCATCGTGTACCGCAACATG
LOC_Os02g42220
OsAffx.12451.1.S1_x_at--334--3271Chr02:25397662..25397686 (25 bp)
CAACATGGCCATCCTGGGTGTCGAT
LOC_Os02g42220
OsAffx.12451.1.S1_x_at--1099--831Chr02:25397685..25397709 (25 bp)
ATGGCTTCAACTCGCTTCCGGAGAA
LOC_Os02g42220
OsAffx.12451.1.S1_x_at--1001--2951Chr02:25397815..25397839 (25 bp)
AATGGCGATCCCTTTCTACATTGGA
LOC_Os02g42220
OsAffx.12451.1.S1_x_at--462--10631Chr02:25397846..25397870 (25 bp)
TTCGCGATCGATATGTTCCTGGGCA
LOC_Os02g42220
OsAffx.12451.1.S1_x_at--941--1631Chr02:25397870..25397894 (25 bp)
AGCGTGATCCTCTTTGTGTGGGAGA
LOC_Os02g42220
OsAffx.12451.1.S1_x_at--978--5591Chr02:25398022..25398046 (25 bp)
GAAATTTTTGTCGAGGGCAGCCAAT
LOC_Os02g42220
Target Sequence 
ACTGGATACTTGACTCTGGCATCACCGAGGTCCATGTTTATCAGCCAGGTGATCGGCACCGGGATGGGCTGTGTCATAGC
TCCCTGTGTCTTCTGGCTCTTCTACAAGGCCTTCAGCAATATTGGCACAAGCGGCACCGAGTACCCGGCGCCATATGCCA
TCGTGTACCGCAACATGGCCATCCTGGGTGTCGATGGCTTCAACTCGCTTCCGGAGAACTGCCTCACTCTCTGCTACATC
TTCTTCGCCGCGGCGATCGCCATCAACCTGATCAGAGACCTGGCGCCGCACAAGGTCTCCAGGTTCATCCCGCTCCCCAT
GGCAATGGCGATCCCTTTCTACATTGGATCGTACTTCGCGATCGATATGTTCCTGGGCAGCGTGATCCTCTTTGTGTGGG
AGAAGCTGAACAAGGCCAAGGCGGATGCGTTTGGACCTGCGGTGGCGTCAGGGTTGATCTGCGGTGATGGGATCTGGACT
CTTCCCCAGTCCATTCTTGCCCTTGCCAAGGTGAAGCCCCCCATTTGCATGAAATTTTTGTCGAGGGCAGCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12451.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis