Browse Element(s) Details


Os.15035.1.S1_at

Description gb:AK073723.1
DB_XREF= gi:32983746
TID=Os.15035.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15035 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033061H13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061H13, full insert sequence.
FL= gb:AK073723.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4223010/11OB-fold nucleic acid binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42200Os.17969.1.S1_at11/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42200Os.51995.1.S1_x_at10/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42200Os.18487.1.S1_at1/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42210Os.51712.1.S1_at11/112+25387106..25388704membrane-associated salt-inducible protein, putative, expressed
LOC_Os02g42220Os.6489.1.S1_at11/112+25394018..25398463transposon protein, putative, unclassified, expressed
LOC_Os02g42220OsAffx.12451.1.S1_x_at11/112+25394018..25398463transposon protein, putative, unclassified, expressed
LOC_Os02g42230Os.15035.1.S1_at10/112+25398544..25402499OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os02g42240Os.7065.1.S1_at11/112+25404559..25405031expressed protein
LOC_Os02g42250OsAffx.24684.1.S1_at11/112+25405640..254065995-azacytidine resistance protein, putative
LOC_Os02g42270OsAffx.12452.1.S1_at11/112+25408842..254097895-azacytidine resistance protein, putative
LOC_Os02g42280OsAffx.24685.1.S1_at11/112+25417824..25420552UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g42290Os.4948.1.S1_x_at11/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42290OsAffx.24686.1.S1_at10/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42290Os.4948.2.S1_at1/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15035.1.S1_at--1082--10371Chr02:25399070..25399094 (25 bp)
TTATGTGAGCCGTCGTCTTAATCTA
LOC_Os02g42230
Os.15035.1.S1_at--895--10251Chr02:25398925..25398949 (25 bp)
TTTGTATGCCACTATCGATGACCAC
LOC_Os02g42230
Os.15035.1.S1_at--1139--311Chr02:25398859..25398883 (25 bp)
ATACGTATGCTTCACAGCTTCAAGG
LOC_Os02g42230
Os.15035.1.S1_at--1099--1411Chr02:25398821..25398845 (25 bp)
AGAAATGTGTGCACTCCGCGAGAGT
LOC_Os02g42230
Os.15035.1.S1_at--1020--6071Chr02:25398800..25398824 (25 bp)
GAGTAGTTACTGCAGAGTGCCTCGC
LOC_Os02g42230
Os.15035.1.S1_at--144--1131Chr02:25398785..25398809 (25 bp)
AGTGCCTCGCGTGATTTTTCTACAG
LOC_Os02g42230
Os.15035.1.S1_at--103--991Chr02:25398762..25398786 (25 bp)
AGGAGATCACCAGGCAATCAGCTTA
LOC_Os02g42230
Os.15035.1.S1_at--1128--9831Chr02:25398714..25398738 (25 bp)
TAAATAACTACTCCCTTGGCAGTCA
LOC_Os02g42230
Os.15035.1.S1_at--512--2331Chr02:25398580..25398604 (25 bp)
AAAGTTACTCATCCCGCTGTTTGTC
LOC_Os02g42230
Os.15035.1.S1_at--552--4731Chr02:25398565..25398589 (25 bp)
GCTGTTTGTCGGTCTTGATCTACAA
LOC_Os02g42230
Os.15035.1.S1_at--1130--11NONE
ATTGGCCATGCCTTGTATTTCCAAA
NONE
Target Sequence 
TTATGTGAGCCGTCGTCTTAATCTACCAGAGGAAACAGTCGGGAAAATCATTNATAGACCAAGTTGATCTGGGACATTTG
TATGCCACTATCGATGACCACCANTTACAAGTCCACAATGAATGGTTGATCGTATTCAATNTTATACGTATGCTTCACAG
CTTCAAGGTCGCATGGAGCCAAGAAATGTGTGCACTCCGCGAGAGTAGTTACTGCAGAGTGCCTCGCGTGATTTTTCTAC
AGGAGATCACCAGGCAATCAGCTTAACTGTTCAATTAAGTTGTTTATCTAAATAACTACTCCCTTGGCAGTCAGGCGAGT
AGCTTGATAGCATGTTAGATCTTTAGGAGCTTCTTTTGTGTTTCAAACAACTATGAACGTGTTTGCAATTGAAGCATCTT
ATTTTCTTATGACNAGTACNAGGCAAAGTTACTCATCCCGCTGTTTGTCGGTCTTGATCTACAATTGGCCATGCCTTGTA
TTTCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis